Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq122 154 4e-33 seq154 102 2e-17 >seq122 Length=4874392 Score = 154 bits (170), Expect = 4e-33 Identities = 255/364 (70%), Gaps = 7/364 (2%) Strand=Plus/Plus Query 8755 CGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGACTACCTGCAGCTGATGTCGGGTGAC 8814 ||||| |||| | || | ||||| | | |||||||||||||||||| || ||| | Sbjct 4793472 CGCGAGCACGGCGGTCTGAGCATGATCATGATCGACTACCTGCAGCTGATG-CGCGTGCC 4793530 Query 8815 GGCGGCGGATCTGAAATGCGGGCCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAA 8874 | | | || || | || | ||| ||||||| || || ||| | || || | Sbjct 4793531 GTCACTG--TCCGATAACCGTACGCTGGAGATCGCCGAGATCTCACGCTCGCTTAAGGCA 4793588 Query 8875 ATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAG 8934 | ||||| || || | || ||| | | ||||||||||||||||| || || ||| Sbjct 4793589 CTGGCGAAAGAGCTGCAGGTGCCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCCCTGGAG 4793648 Query 8935 AATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAG 8994 | || | | ||||| || |||| ||||| ||||| || || || | ||||||||| Sbjct 4793649 CAGCGTGCCGATAAGCGCCCGGTCAACTCCGACCTGCGTGAATCCGGCTCCATCGAGCAG 4793708 Query 8995 GATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCG--CAG 9052 ||||||||| ||||| | ||||||||||| |||||||| ||| || |||||| | | Sbjct 4793709 GATGCCGACCTGATCATGTTTATCTACCGTGATGAGGTGTATCACGAAAACAGCGATCTG 4793768 Query 9053 ATCGCGGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTAC 9112 | | ||| ||| || ||||| | | |||||||| ||||| || || |||||||| | Sbjct 4793769 AAAGGGGT--GGCGGAGATCATTCTGGGTAAGCAGCGTAACGGCCCCATCGGCACCGTGC 4793826 Query 9113 GGCT 9116 | || Sbjct 4793827 GCCT 4793830 >seq154 Length=560718 Score = 102 bits (112), Expect = 2e-17 Identities = 223/330 (68%), Gaps = 3/330 (1%) Strand=Plus/Minus Query 8788 GACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGGCCACCGAGGTC 8847 || ||||| ||| ||||| || ||| | ||| | || | |||| ||| || ||| | Sbjct 275629 GATTACCTTCAGTTGATG-CGAGTGCCTGCG-CTGACC-GAAAACCGGACCTTAGAGATT 275573 Query 8848 GCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCG 8907 || || || || || | | ||| | ||||| ||||| | || || | |||| Sbjct 275572 GCTGAGATCTCACGATCTTTGAAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTCGCC 275513 Query 8908 CTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGAT 8967 | || |||||||| || | ||| | ||| || | || ||||| |||| || ||| Sbjct 275512 TTATCACAGCTTAACCGCTCATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCAGAT 275453 Query 8968 CTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGAT 9027 |||| ||||| || |||| ||||||||||||||| ||||| | |||||||| || || Sbjct 275452 TTGCGTGAGTCAGGATCGATTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGTGAC 275393 Query 9028 GAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAG 9087 ||||| ||| || |||| | | || | || ||||| || || | |||||| Sbjct 275392 GAGGTGTATCACGAAAACAGTGATCTTAAAGGCATCGCGGAAATTATTATCGGTAAGCAG 275333 Query 9088 CGAAACGGGCCGATTGGCACCGTACGGCTC 9117 || || || || || || || || || ||| Sbjct 275332 CGTAATGGTCCTATCGGTACGGTGCGACTC 275303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127536114035148