Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq4080 504 2e-138 seq1959 82.4 2e-11 >seq4080 Length=6683 Score = 504 bits (558), Expect = 2e-138 Identities = 690/958 (72%), Gaps = 8/958 (1%) Strand=Plus/Minus Query 33402 CTCGGTGAACATCGCTGCCGTCTGGTTACACTGCCGCACAAAGATATCAACGAATGCCTG 33461 || ||||| |||||||| |||| | ||| ||| ||||||| |||||||| ||||| Sbjct 6683 CTTGGTGAGCATCGCTGTATGTTGGTCAAACTACCGTACAAAGACATCAACGAGTGCCTA 6624 Query 33462 ATGAACGGCGTCGCTGAGGATGAAAT-CTGGCAGTACATCGGTACAGCGTCATAT-TTCG 33519 | | || | |||| || | | || | |||| || || | | | || |||| Sbjct 6623 AAGGCTGGAATGACTGACGAGCAGGTACTTGATGTACT--GGAACGGGCTGAGATGTTCG 6566 Query 33520 ACCCCGAAGAGCTTTACAGCGCCCGTGAGTTTTATCAGGACACCATCAATGCTTTCTACG 33579 ||||||||||||||||||||||| | ||||| || || |||||| | |||||||||||| Sbjct 6565 ACCCCGAAGAGCTTTACAGCGCCAGAGAGTTCTACCAAGACACCGTTGATGCTTTCTACG 6506 Query 33580 GCAAGCAGCAGTATCTGTTTAACCCACCGTGGGAAACGCTGGCTTACAACTTCCAGTTCC 33639 | || |||| || || || |||| ||| |||||| |||||| ||||| Sbjct 6505 GTCAGGAGCAATACCTATTCCCGACACCTTGGTCAACGCTAAACGGTAACTTCATGTTCC 6446 Query 33640 GTGAGGCGGAGTTAACGCTTGTCAATGGCGTGAACGGTCACGGAAAAACGGAGGTTGTCG 33699 | || || ||| |||| || ||||| || || ||||||||||| |||||||| || || | Sbjct 6445 GCGAAGCAGAGCTAACACTGGTCAACGGGGTAAACGGTCACGGGAAAACGGAAGTGGTAG 6386 Query 33700 GGCATATGGCACTTGAGGCCATGAGACAGGGGATAAAAACATGCGTCGCATCGCTTGAAC 33759 | |||||| | ||||| || |||| || || | ||||| || ||||| || ||||| Sbjct 6385 GCCATATGACCCTTGAAGCGATGAAGCATGGCGTTAAAACCTGTGTCGCCTCACTTGAGT 6326 Query 33760 TGAAGCCCGGGATTCTGCTTAAACGCCTGACCCGGCAGTCTACATGTTGCAAAATGCCGC 33819 | ||||| || |||| || ||||| || || ||| |||| || ||| | || | Sbjct 6325 TAAAGCCAGGCCAATTGCTCAAGCGCCTTACTCGTCAGGCTACCTGCGTTAAACTCCCAC 6266 Query 33820 C--AGTTCTGGAAATCGAATCAGCATTTAAGTTTTACGATGACCGGCTCTGGTTATTTGG 33877 | || | ||||| |||||||| |||| ||||||||||||||| | ||||||||||| Sbjct 6265 CGAAGAAC--GAAATTGAATCAGCGTTTAGTTTTTACGATGACCGGTTATGGTTATTTGG 6208 Query 33878 CCTGACAGGTACGGCCAAGGCGGAACGCCTGATTGAAATTTTCACATATGCCAGACGGCG 33937 || || || || || || || || || || |||| || ||| || || ||| ||| Sbjct 6207 ACTAACGGGAACCGCTAAAGCCGACCGACTTCTTGAGATATTCGAGTACGCGAGAAAGCG 6148 Query 33938 ATACGGCATCCAGTTATTCATCATCGACAGCCTCATGAAGTGCGGGATTGGCGATGACGA 33997 |||||| | ||||||||||||| |||||||| ||||| ||||| ||||| || || || Sbjct 6147 TTACGGCGTGAAGTTATTCATCATTGACAGCCTAATGAAATGCGGCATTGGTGACGATGA 6088 Query 33998 TTACAACGGGCAAAAGGCGTTTGTTGACGCGCTGTGCGACTTCAAGAATAAAACCAACTC 34057 ||||||| ||| ||||| |||||||| || | || ||||||||||| ||| ||| Sbjct 6087 CTACAACGCGCAGAAGGCTTTTGTTGATGCTGTCTGTGACTTCAAGAACCGAACAAACAG 6028 Query 34058 TCACATTATCCTCGTCACTCACTCCAGAAAGGGAGACAGCGAGGAGAAACCTACCGGAAA 34117 || | || ||||| |||||| | || || |||||||| ||||| ||||| ||||| Sbjct 6027 CCATGTAATACTCGTAACTCACAGTCGGAAAGGTGACAGCGAAGAGAAGCCTACTGGAAA 5968 Query 34118 GATGGACGTAAAAGGCTCAGGAGCGATTACAGACCTGACAGATAACCTATTTATCATCTG 34177 ||||||||| |||||||| || ||||||| ||||| ||||| ||||| ||||||||||| Sbjct 5967 GATGGACGTGAAAGGCTCTGGTTCGATTACTGACCTTACAGACAACCTGTTTATCATCTG 5908 Query 34178 GCGCAATAAAGCTCGCGAGAGAGCGTTACAGCGCGTTCAGGCTGGCGAGCAAATTAACGA 34237 ||| || ||||| || |||| || ||||| | | || | | | ||| Sbjct 5907 GCGAAACAAAGCCCGTGAGAAGGCCATACAGAAGCAAAACCTTAATGAAGCATTGACCGA 5848 Query 34238 GAAAGACCAGCAACTTCTTGCTGCGCCCGCATCTGTTTTAATGCTTGAGAAGCAGCGAAA 34297 |||||||| | || || || ||||| | | ||||| ||||| ||||| || Sbjct 5847 CAAAGACCAATCAGCACTCAGCGCTCCTGCATCCATGCTCATGCTAGAGAAACAGCGCAA 5788 Query 34298 CGGGGAAGGGTGGGAAGGCGGTGTGCCGTTATTTCTTGACGAGCAGTCTCACCAGTTC 34355 |||||||||||||||||| || | ||| ||| || || || | || ||||| ||| Sbjct 5787 CGGGGAAGGGTGGGAAGGTGGCATACCGCTATACCTAGATGACCCATCGCACCAATTC 5730 >seq1959 Length=43063 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38547 ATCGCTGATATGCAGAAGCGTCAACGTGATGTAGCAGAACTCGACGCCAGATACACAAAG 38606 ||| | || ||||||| || || || ||||| || | ||||||||| | ||||||||| Sbjct 9631 ATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACAAAG 9690 Query 38607 GAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 38666 ||| | ||||||||||| || | || ||| |||||| || |||| || ||| || Sbjct 9691 GAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGCCGC 9750 Query 38667 AAGCG 38671 ||||| Sbjct 9751 AAGCG 9755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130988657239622