Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq93 114 2e-20 seq212 93.3 5e-14 >seq93 Length=974399 Score = 114 bits (126), Expect = 2e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || || || || | ||||| |||| ||||||||||| || || | ||||| Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 | | ||||||||| ||| ||| |||||||||||||| ||||||||| || || | Sbjct 914687 TAAGCCAGAAAATGGCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGG 914746 Query 127659 CAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGTG 127718 ||| || ||||| ||||| | | |||| | ||| ||||||||| ||||| | | Sbjct 914747 CAATTACTCGCTCAGCAAACGTGGCAGACTCATGAGCAATCCACTTCATGGCCCAATCGG 914806 Query 127719 CCTTTTTCTCGATACATGGGA 127739 |||| |||| | |||||||| Sbjct 914807 CCTTCTTCTTCACACATGGGA 914827 >seq212 Length=676889 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 175928 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 175987 ||||| || || ||||||| || ||||| |||||| ||| ||| ||||| |||||| Sbjct 82505 TCTTTACCTCCAGTGAGACGTGTACCAAACTGACCATTGGGCATAAGAAGATTAATATTG 82564 Query 175988 TTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCG 176047 || || ||||| | | || || ||||||||||| || ||| ||||||||||| Sbjct 82565 TTGCTACCAATATAATTTTGAGCTAAGTTGACAATCGTTCCCATGAGTGAGACTTCACCA 82624 Query 176048 TGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCATCC 176107 || ||||| || || | || || || | | || ||||| ||||| || | || | | Sbjct 82625 TGGTGGTAAGCTGAATGTTCTGCTACTGAACCAGCTAACTGAGCCACTTTTACTTCTTTC 82684 Query 176108 TTGAGGTTCTTGTGGAAGCACGCATACATGACCT 176141 ||| ||| | | || || | ||| || |||| Sbjct 82685 TTGTCATTCCTTTTTAAACAAGTATAAATTACCT 82718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613459170055080