Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_013693.1 Length=158006 Score E Sequences producing significant alignments: (Bits) Value seq122 145 8e-30 seq83 89.7 5e-13 >seq122 Length=4874392 Score = 145 bits (160), Expect = 8e-30 Identities = 220/310 (71%), Gaps = 5/310 (2%) Strand=Plus/Plus Query 83553 ACCACGCGCAGACTTTTTAGTCCCGCCTTTATCGGTCTTCGGCTCTTTGAAGATCTCACG 83612 ||| |||||||| ||||| | ||| || ||||| ||||||| ||||||||||||||| Sbjct 3983238 ACCGCGCGCAGAGTTTTTCATGCCG---TTGTCGGTTTTCGGCTGTTTGAAGATCTCACG 3983294 Query 83613 GAATTCACCGTTCACCTTACCAGCCGTTGCTTTCACCGCCGTGCCAGTACTGTCACGGGT 83672 || |||| ||| | ||| ||| ||||||| || ||| ||||||| || Sbjct 3983295 CCCCTCTCCGTGCACTTCGCCATACGTCGCTTTCATGGCGAAACCAAAGGTGTCACGCGT 3983354 Query 83673 GTTCATCTGGTAGGTGTAGGAACCGATACCGAACACCACGTTGATGGAAGCGAAG-TTCC 83731 ||| |||||| || || || |||| ||||||||||| ||| || || ||| | Sbjct 3983355 GTTGTACTGGTACGTATAAGACCCGACGCCGAACACCACATTGCTGCTGGCAAAGCCTTT 3983414 Query 83732 GGCCAGCCAGACGGCTAAAGATCTGGTCTTCACGCGCCAGGGTGATGGAGTCGCCGTAAA 83791 |||| ||||||| || | |||||| | ||||| | ||||| || ||||||||||| | Sbjct 3983415 GGCC-TCCAGACGACTCAGGATCTGATTGGCACGCTCGAGGGTAATCGAGTCGCCGTAGA 3983473 Query 83792 TCAGACCGATGTGTTCGTCCAACAGGAAGTGGCCAGTTTCGGTCTGGGTCCCGCCAAAGA 83851 ||||||| | ||| ||||| || || ||| | | | || ||||| |||| Sbjct 3983474 TCAGACCCACGTGCGGGTCCAGCACCTTGTAGCCCCTGGCATTGACCGTGCCGCCGAAGA 3983533 Query 83852 TCTCCCACAG 83861 |||||||||| Sbjct 3983534 TCTCCCACAG 3983543 >seq83 Length=912621 Score = 89.7 bits (98), Expect = 5e-13 Identities = 273/422 (65%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 53641 ACCAGGCGCTCAAACATCACGCGGTTGATCTGAATACCGTAGTCGATACGGCGTTCGCGG 53700 ||||| || | | |||| | |||||| || | ||||| || | | || | ||| Sbjct 580203 ACCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGG 580144 Query 53701 TTTTCTTCAGTGCCACGGTTATTCTTCAGTACAACGACGTCATCGAACTGGTAATGCCAC 53760 || ||||| ||||||||||| ||||| || | | | || | | | |||||| Sbjct 580143 TTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCAC 580084 Query 53761 AGAGGGATGTACGCTGTCGCCGCACCACCACGAATGCCGCCCTGGGAGCAAGACTTGAGC 53820 | |||| || |||||| ||||| || || | |||||| || |||||||| || | Sbjct 580083 ATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACG 580024 Query 53821 GCCCCAGTGAGATACTTGATGAATGGGATCAGGCCTGTGTGAACCATCTCTCCGCCGCGA 53880 ||| || | ||| ||| ||||| || || || | || || || || Sbjct 580023 GCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGG 579964 Query 53881 ATAGGACTGCCAATCCCACGGATAGCCCCGACGTCAAAGCCGATACCCGCACGTTTGGAC 53940 || || ||||| | | |||| ||| || | | | ||||| || || |||| || Sbjct 579963 ATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAA 579904 Query 53941 ACATAGTCAACGATGGTCTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGTTTTG 54000 || || | |||||| | | | || |||||||||||||| | | | || ||| | | Sbjct 579903 ACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCG 579844 Query 54001 ATCAGGACACAGGAACTGAACTGACGGGTAGGAGTACGAACACCTGCCATAATCGGGGTG 54060 || || || || || ||||| || || || || || || || || ||||| || || || Sbjct 579843 ATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTA 579784 Query 54061 GG 54062 || Sbjct 579783 GG 579782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505451626357680