Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq19 114 3e-20 seq3962 107 5e-18 seq275 107 5e-18 >seq19 Length=2947477 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||||| ||| ||||| |||||||| |||||||| || |||||||||||||||||| Sbjct 340570 TTGTAGTCAGACAATGTCCTGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGC 340629 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 ||||| || || ||||| ||||||||||| |||||| || | || ||| Sbjct 340630 TGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGAATCT 340689 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | || || || | ||||| ||||| ||||| || || || || || || || Sbjct 340690 GAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 340745 >seq3962 Length=6517 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || || || |||| ||||||||||| ||| || | || || Sbjct 398 AGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCGTCC 339 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| || |||||||| || || || || ||| ||| Sbjct 338 TCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCC 279 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| || || | | || || |||| ||||| ||| Sbjct 278 TGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTC 219 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||| || Sbjct 218 TTGCCTGTAAGGGTCTTGACGAAAATCTG 190 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || || || |||| ||||||||||| ||| || | ||||| Sbjct 170 AGAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCC 111 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| || | |||||| || || || || || ||| Sbjct 110 TCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCC 51 Query 199538 TGAATCTTTTGCTTCAC 199554 || ||||| |||||| Sbjct 50 TGGATCTTAGCCTTCAC 34 >seq275 Length=398669 Score = 107 bits (118), Expect = 5e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | ||||||||| | || || | ||||| || ||||||||||| || || || Sbjct 170723 TTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAATA 170664 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTC 199560 |||||||||||||| || |||||||| |||||||| ||| |||| ||| || Sbjct 170663 AGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAAT-TTTGGCTTTGACGTTCTC 170605 Query 199561 GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 | | ||||| | ||| || || || ||||| || || || ||||| ||||||||||| Sbjct 170604 AATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAAA 170545 Query 199621 AATTTG 199626 || || Sbjct 170544 GATCTG 170539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178826997804621