Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq43 107 2e-18 seq3962 96.9 4e-15 seq275 84.2 2e-11 >seq43 Length=2082672 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 |||||||| || ||||| || || |||||| |||||||||||||| || | ||||| Sbjct 901291 AAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGA 901232 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || || ||||||||||| || || ||||| |||||||| || | || | || || Sbjct 901231 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGGATGCCTTCT 901172 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 ||||| ||| || ||| | || | | | || | ||| || |||| || Sbjct 901171 TTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACTTCCAGAGTA 901112 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||||| ||||| || || || || |||||||| |||||| Sbjct 901111 ATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATT 901073 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||||||||| || | ||| || | || || |||||||| ||||| || Sbjct 901036 TCCTTCTGAATATTGTAGTCAGACAAAGTACGGCCATCTTCAAGCTGCTTACCGGCAAAG 900977 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | || ||| || ||| |||||| ||||| || Sbjct 900976 ATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTTAGCCTTGACGTTC 900917 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | || | || || |||| |||||||| ||||| ||||| || || || Sbjct 900916 TCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACG 900857 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 900856 AAGATCTGCAT 900846 >seq3962 Length=6517 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| |||||||| || | ||||| |||| ||||| |||||||||||||| Sbjct 377 TCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAG 318 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||| || | || | || ||| |||||| |||||| ||||| || Sbjct 317 ATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCCTGGATCTTAGCCTTGACGTTC 258 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | || | || || |||| |||||||| ||||| || || || || || Sbjct 257 TCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTTGCCTGTAAGGGTCTTGACG 198 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 197 AAAATCTGCAT 187 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || || ||||| || || || || | || || ||||||||||| || || Sbjct 6289 CCTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 6230 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | || | || |||||||||| ||| || ||| | || Sbjct 6229 ATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTC 6170 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| | || || || | |||||||| ||||| || || || || ||| Sbjct 6169 TCAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGACA 6110 Query 46583 AAGATTTGCATT 46594 || || |||||| Sbjct 6109 AAAATCTGCATT 6098 >seq275 Length=398669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 ||||| || |||||||| || || |||||| | || || |||||||| || || || || Sbjct 170723 TTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAATA 170664 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525 | ||||||||||| | || | | ||||||||| || || |||| || | Sbjct 170663 AGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCTCA 170604 Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 | | ||| | ||| || || | ||||| ||||| || || || ||||| |||||| Sbjct 170603 ATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAAAG 170544 Query 46586 ATTTGCATT 46594 || |||||| Sbjct 170543 ATCTGCATT 170535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565194148898760