Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3962 105 7e-18 seq275 96.9 3e-15 seq17 82.4 8e-11 >seq3962 Length=6517 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || || ||| || | Sbjct 187 ATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACTCTGGAGGTTGAGCCCTCG 246 Query 38304 GA---CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 || || || | |||| | || | || |||| ||||||||||| || ||| | || Sbjct 247 GATTCCATCGAG--AACG-TCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCCCCAGAT 303 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| || || || |||| |||||| | |||||| Sbjct 304 CAGCAGCGACTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCTTGTCTGACTAC 363 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || ||| | || || ||| | || || ||| || | || || Sbjct 364 AACATCCAGAAAGAATCCACCCTCCATCTTGTTCTCCGTCTGCGTGGTGG 413 >seq275 Length=398669 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| ||||| || ||||| |||||| | || || || || | Sbjct 170535 AATGCAGATCTTTGTGAAAACCCTCACTGGGAAAACTATCACCTTAGAGGTTGAACCCTC 170594 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | | |||| | |||| ||||| | ||||| || ||||| ||| | |||| Sbjct 170595 AGACTCTATTGAGAACG-TCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCCCCAGACC 170653 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| || || || ||||| || || | |||||| || ||||||| Sbjct 170654 AGCAGCGTCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACACTGTCAGACTACA 170713 Query 38422 ACATCCAAAA 38431 |||| ||||| Sbjct 170714 ACATTCAAAA 170723 >seq17 Length=3381533 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/109 (77%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 107723 CTTCGTCGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTC 107782 ||||| |||||||| || ||||||||| | |||||| ||||| |||| || ||| Sbjct 1582150 CTTCG--GGGTTGAAGTGTCCGCCGGCCGCGGCGCAGCCCGTGCTCACGTCCCCCTTCTC 1582093 Query 107783 GTGCACGTGGAAGCCGTGCAGGCCGCGCGGCAGGCCGAGCACGTAGCCG 107831 ||| |||||||||||||| ||||| ||| ||| || ||||| |||| Sbjct 1582092 GTGGACGTGGAAGCCGTGGCGGCCGGGCGCCAGCCCCGACACGTTGCCG 1582044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500133642721920