Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq122 248 1e-60 seq83 174 2e-38 >seq122 Length=4874392 Score = 248 bits (274), Expect = 1e-60 Identities = 333/462 (72%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 41091 TCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGT 41150 || || ||||| ||||||||| | || || || || || |||||||||||| | || Sbjct 2805874 TCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGC 2805933 Query 41151 GTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTC---TGCGATC 41207 ||| | ||||| | || || |||| ||| ||||||| ||||| ||||| Sbjct 2805934 GTACTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGC---CACCTCCAGCGCGATT 2805990 Query 41208 GTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATG 41267 |||||||| |||| || ||||| ||||| || ||||||| || | || || || || Sbjct 2805991 GTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTG 2806050 Query 41268 GGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAACAT 41327 || ||||| || |||||||| | || || || ||||| |||| || || Sbjct 2806051 GGCAGCCCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCAC 2806110 Query 41328 ATCCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTG 41387 |||| ||||| || || ||||| || ||||| ||||| || || ||||| || || ||| Sbjct 2806111 TTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTG 2806170 Query 41388 TATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGC 41447 | || || | |||||||||||||| |||| ||| |||||| ||||||||||| ||| Sbjct 2806171 TTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGC 2806230 Query 41448 GTAGAAGAAAACCGCGTTCGTCATCTTGATTACGGTGTACAGCTTAACCAGTTGATGTAT 41507 || |||| |||||||| |||||| | || ||||| || ||||| ||| || |||||||| Sbjct 2806231 GTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCTGATGTAT 2806290 Query 41508 AAACGCTTAATGAATCGTGATTACATTACGCTGTTTAGTCCG 41549 | ||| | |||| |||| | ||||| ||||| || ||| Sbjct 2806291 CAGCGCCTGCTGAAGGGTGAAGAGATTACTCTGTTCAGCCCG 2806332 Score = 129 bits (142), Expect = 7e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 51218 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 51277 ||||| || || |||||| | ||||| ||||| || |||| ||||| || || ||| Sbjct 3215822 GTGGAGGGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCG 3215763 Query 51278 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 51337 || | || || || ||||| || ||| | || || || ||||| |||||||| |||||| Sbjct 3215762 GTGAAGCACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGT 3215703 Query 51338 TTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51397 |||||||| |||| || |||||||| || ||||| || | || |||||||| || || Sbjct 3215702 TTTAACTCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGC 3215643 Query 51398 CTATAA 51403 || ||| Sbjct 3215642 CTTTAA 3215637 Score = 102 bits (112), Expect = 9e-17 Identities = 195/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 42289 ACGGCTTGCGCAACTCTACTCTTTCTGCTTTAATGCCTTGTGAAAGTAGTTCACAGGTTA 42348 ||||| ||||||||||||| || ||||| | ||||| | ||| | ||| ||| | Sbjct 2807084 ACGGCCTGCGCAACTCTACGCTCTCTGCCCTGATGCCGTCTGAGACCTCTTCCCAGATCT 2807143 Query 42349 GTAACTCTACCAACGGGATCGAACCTCCGCGCGGTTTAGTGAGTATCAAATCTTCGAAAG 42408 ||| | |||||||| || ||||| ||||||||| | || || ||| | ||||||| Sbjct 2807144 CGAACGCCACCAACGGTATTGAACCACCGCGCGGTCATATCAGCATTAAAGCGTCGAAAG 2807203 Query 42409 AAGGACACTAT-AACCAGGTTGTGCCTAACCAGAATAACCAGATTGATTTCTATGATCTG 42467 | || || | | ||||| ||||| | | | || || ||| ||| || ||| Sbjct 2807204 ACGG-CATTCTGCGTCAGGTGGTGCCAGAGTATGAGCGCCTGAAAGATAACTACGAACTG 2807262 Query 42468 CTCTGGGATATGGCTAAACGCGGTAACAAAGGGTATCTGTCTCATGTAGCAGTTATGCAG 42527 || ||||||||| | || |||| | || || ||| | || | | |||||| Sbjct 2807263 CTGTGGGATATGCCAAA------TAACGACGGTTACCTGCAGCTGGTCGGCCTGATGCAG 2807316 Query 42528 AAGTTTGTCGATCAGTCTATTTCTGCAAACACCAACTATGACCCG 42572 || ||| |||| ||| | ||||| | ||||||||||| |||||| Sbjct 2807317 AAATTTATCGACCAGGCCATTTCATCCAACACCAACTACGACCCG 2807361 Score = 102 bits (112), Expect = 9e-17 Identities = 201/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 39960 GACCAGAT-AGCAAAAGTCATTGAACAACTGAAATCAACCCCAGACGATCGCGGGATCAT 40018 |||||| | ||||| || | ||||| |||||| ||| ||| ||| | ||||| Sbjct 3442515 GACCAGCTGAGCAAG-GTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGCATCAT 3442457 Query 40019 CGTTTCTGCCTGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTCACTGTTT 40078 ||||||||| |||||| | || || ||||| ||||| || ||||| ||| || Sbjct 3442456 CGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCACGCGTT 3442397 Query 40079 CTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTGA 40138 ||| |||||| || |||| || || || || ||||||||| || || Sbjct 3442396 CTTCCAGTTCTACGTTGCGGACGGCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGA 3442337 Query 40139 TGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCATATTATCGC 40198 | ||||| | || ||||||||||||||||| ||| ||| | ||| |||||| || || Sbjct 3442336 TATCTTCCTCGGCCTGCCGTTCAATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGC 3442277 Query 40199 TGATATTTGCGGGTACGAAGTGGGCGATCTGGTTTGGACTGGTGGTGATGTCCAT 40253 | |||| |||||||| ||| | || ||||| ||||| ||| |||| Sbjct 3442276 CCAGCAGTGCGACCTGGAAGTGGGTGATTTTGTCTGGACCGGTGGCGATACCCAT 3442222 Score = 91.5 bits (100), Expect = 2e-13 Identities = 200/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 42860 GCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAACTTTCTTTCTTCTGGCGTCC 42919 ||||||| | | | || |||| |||| |||| || || |||||||||||||| || Sbjct 2807728 GCAGAAATATGACATCTTTGAAAAGCTGATCGAAAAGCAGCTCTCTTTCTTCTGGCGCCC 2807787 Query 42920 GGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAACTTCCTGAACATGAAAA 42979 ||||||||| || | || || ||||| | ||| || || || || ||||| Sbjct 2807788 GGAAGAAGTGGACGTCTCGCGCGATCGTATTGACTATCAGGCGCTGCCAGAGCACGAAAA 2807847 Query 42980 AATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGG 43039 | ||| || ||||| ||||||| || ||| | || | ||||||||||| | Sbjct 2807848 ACACATCTTTATCAGCAACCTGAAGTATCAGACTCTGCTGGACTCTATTCAGGGACGCAG 2807907 Query 43040 GCCTAACCTCGCATTTTTGCCAATTGCATC-CGATGTGAGCA-TGGAAACCTGGATCGAA 43097 || ||| | || || |||| | ||| |||| | | ||||||||||||| ||| Sbjct 2807908 CCCGAACGTGGCGTTGCTGCCGCT--GATCTCGATCCCGGAACTGGAAACCTGGATTGAA 2807965 Query 43098 ACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAA 43153 || |||||||| || || |||||| ||| ||||| |||||| ||||| Sbjct 2807966 ACCTGGGCGTTCTCCGAGACTATCCACTCGCGTTCGTACACCCATATTATTCGTAA 2808021 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 153061 TCCCGACTAAACGCGATCTTCTGGCTGGTATCGTTTCTAAACATATGGCGCGTAACCATA 153120 |||| ||| | |||||||| ||||| || ||||| | ||||| || ||| | |||| Sbjct 3819959 TCCCCACTCAGCGCGATCTGCTGGCCGGGATCGTCGCCAAACACTACGCCCGTCAGCATA 3820018 Query 153121 TTCTACCGAAACATATTGTTGCGGCGCATGATTCCGGTGATATTCATTATCACGATCTGG 153180 | || ||| || | || || ||||| ||| || || || ||||||||||| | Sbjct 3820019 TGCTGCCGCGTGATGTGGTCAGCGCCCATGAGCGCGGCGAGATCCACTATCACGATCTCG 3820078 Query 153181 ATTAC-AGCCCTTTCACCCCATACACTAACTGCTGTCTTGTTGACCTGAAAGGCATGTTA 153239 | ||| ||| ||| ||| || ||||||| || | |||||| |||||| | Sbjct 3820079 ACTACTCGCCGTTTTTCCCGAT-GTTTAACTGCATGCTGATCGACCTGCGGGGCATGCTG 3820137 Query 153240 GAAAACGGGTTCCGTATGGGTAACGCTGATATCGAACCGCCTAAATCAATC 153290 |||| ||| ||||||||||| || |||||||||||||| || ||| Sbjct 3820138 ACGCACGGCTTCAAAATGGGTAACGCCGAGATCGAACCGCCTAAGTCGATC 3820188 >seq83 Length=912621 Score = 174 bits (192), Expect = 2e-38 Identities = 292/421 (69%), Gaps = 6/421 (1%) Strand=Plus/Plus Query 41095 TACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAG 41154 |||| || ||||| ||||| || ||||| || || || ||||| ||| | || || Sbjct 579780 TACCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGC 579839 Query 41155 TAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT---GCGATCGTGA 41211 | || || | || ||| | | ||| | ||||| || ||| || ||||| | Sbjct 579840 TTATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCC---ACTTCTAGTGCTATCGTTA 579896 Query 41212 AGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATGGGTT 41271 | || |||||||||| || || || || | || || || | |||||| || | || Sbjct 579897 AATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCA 579956 Query 41272 CTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAACATATCC 41331 ||||||||||||||||||| | ||||| ||| || || |||| ||||| ||| Sbjct 579957 GCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACACTTCC 580016 Query 41332 AAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATT 41391 | || || || ||||| || || || || ||||| || || ||||| || ||||||| || Sbjct 580017 AGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTT 580076 Query 41392 ATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAG 41451 | ||| | ||||| ||||| |||||| | | | || |||| || ||| || || | Sbjct 580077 ACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTG 580136 Query 41452 AAGAAAACCGCGTTCGTCATCTTGATTACGGTGTACAGCTTAACCAGTTGATGTATAAAC 41511 ||| ||||| || ||||| || |||||||| ||||| | ||| | | |||||| ||| Sbjct 580137 AAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTATCAAC 580196 Query 41512 G 41512 | Sbjct 580197 G 580197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558023510314080