Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_014260.1 Length=172253 Score E Sequences producing significant alignments: (Bits) Value seq83 163 3e-35 seq122 138 1e-27 >seq83 Length=912621 Score = 163 bits (180), Expect = 3e-35 Identities = 294/427 (69%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 144930 CCGTAGTCCATATGTCGAATACGGTTTTCATCAACGCCCTTGTTATTTTTCAGAACGAGC 144989 ||||| || | || || | |||||| | ||||| || |||||||||||| || | Sbjct 580167 CCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAAT 580108 Query 144990 AGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATT 145049 | |||||| |||||| ||||| ||||| ||| | || || || || || || | Sbjct 580107 AAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACG 580048 Query 145050 CCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCG 145109 || ||||| || || ||||| || || |||||||| ||||| |||| || ||| |||| Sbjct 580047 CCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCG 579988 Query 145110 GTATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTG 145169 ||||| ||||||| | || | ||| |||||||| ||| | ||| Sbjct 579987 GTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTG 579928 Query 145170 ATACCAATACCTGCACGTTTAGAAATGTATTCAATTATCGAGTTAGCAGTTTTGTTAATA 145229 ||||| || ||||| |||| |||| ||||| || || | ||| ||| ||| ||| Sbjct 579927 ATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATA 579868 Query 145230 GA-TTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGGCGAGTCGGTGT 145288 || | | ||| | ||||| || |||| ||| || || || |||||||||||||| || Sbjct 579867 GAGTCTAAGCTA-TCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGT 579809 Query 145289 ACGCGCTCCAGCCATAATAGGGGTAGGCAACGAAACCTGACGAGTACTTACAGCATCATA 145348 || | |||||||| || || ||||| || |||| | | || || |||||||| Sbjct 579808 CCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATA 579749 Query 145349 AAAACGA 145355 ||| ||| Sbjct 579748 AAAGCGA 579742 >seq122 Length=4874392 Score = 138 bits (152), Expect = 1e-27 Identities = 282/419 (67%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 144908 CATCAGGTCATTCAACTGGATTCCGTAGTCCATATGTCGAATACGGTTTTCATCAACGCC 144967 |||||| | |||| ||| | |||||||||||||| || | ||||| | |||||||| Sbjct 2806287 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 2806228 Query 144968 CTTGTTATTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 145027 ||| || ||||| || ||||| |||| ||||||| |||||| || || || | Sbjct 2806227 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 2806168 Query 145028 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATG 145087 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 2806167 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 2806108 Query 145088 TTTCCAGAATGGAATAACACCGGTATGTTTGACTTCACCCATGCCAATACGAGAACCTTC 145147 || |||| ||||| ||||| || ||||||| || || | || Sbjct 2806107 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 2806048 Query 145148 AGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTAT 145207 ||||| || ||| |||| || || ||||| ||||| | ||||| ||| | | || Sbjct 2806047 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 2805988 Query 145208 CGAGTTAGCAGTTTTGTTAATAGATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGA 145267 || | | | || |||||| || | || |||||| ||||| | || || || Sbjct 2805987 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 2805928 Query 145268 ACTAAATTGGCGAGTCGGTGTACGCGCTCCAGCCATAATAGGGGTAGGCAACGAAACCT 145326 || || ||||| ||||| || ||| | || | |||||| || || |||| ||||| || Sbjct 2805927 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 2805869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551038457199240