Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_014461.1 Length=73453 Score E Sequences producing significant alignments: (Bits) Value seq122 123 1e-23 seq83 82.4 4e-11 >seq122 Length=4874392 Score = 123 bits (136), Expect = 1e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48972 GGGCTACATCGAGCTGGACCCGCATGTCGGTGTGATTTACGGCGATTCGATCACGATTGA 49031 |||||||| | |||||||||||| || ||| |||| |||||||| ||||| || | || Sbjct 3983508 GGGCTACAAGGTGCTGGACCCGCACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGA 3983449 Query 49032 GCGCGCTAAGCAGATCACCGAC-CGTATGCGGTCGCTCGGGTACGCGTCGACAAACGTGG 49090 ||| || || |||||| | || ||| || | | || | || | || |||| Sbjct 3983448 GCGTGCCAATCAGATC-CTGAGTCGTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGG 3983390 Query 49091 TGTTCGGTGTCGGCTCTTACACGTATCAGCACAACACGCGTGACACGTTCGGGTCCGCGA 49150 ||||||| ||||| ||||| ||||| ||| |||||||||||||||| || || | ||| | Sbjct 3983389 TGTTCGGCGTCGGGTCTTATACGTACCAGTACAACACGCGTGACACCTTTGGTTTCGCCA 3983330 Query 49151 TGAAGGCGACGT 49162 |||| ||||||| Sbjct 3983329 TGAAAGCGACGT 3983318 Score = 82.4 bits (90), Expect = 4e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 61302 TCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGCAGGTTCAAATCCT 61361 |||||||||||||||||||||| | |||| |||||| | |||||||||||| |||||| Sbjct 980001 TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCT 980060 Query 61362 GCACG 61366 ||||| Sbjct 980061 GCACG 980065 Score = 82.4 bits (90), Expect = 4e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 61302 TCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGCAGGTTCAAATCCT 61361 |||||||||||||||||||||| | |||| |||||| | |||||||||||| |||||| Sbjct 980203 TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCT 980262 Query 61362 GCACG 61366 ||||| Sbjct 980263 GCACG 980267 Score = 82.4 bits (90), Expect = 4e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 61302 TCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGCAGGTTCAAATCCT 61361 |||||||||||||||||||||| | |||| |||||| | |||||||||||| |||||| Sbjct 980319 TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCT 980378 Query 61362 GCACG 61366 ||||| Sbjct 980379 GCACG 980383 Score = 82.4 bits (90), Expect = 4e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 61302 TCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGCAGGTTCAAATCCT 61361 |||||||||||||||||||||| | |||| |||||| | |||||||||||| |||||| Sbjct 980512 TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCT 980571 Query 61362 GCACG 61366 ||||| Sbjct 980572 GCACG 980576 Score = 82.4 bits (90), Expect = 4e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 61302 TCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGCAGGTTCAAATCCT 61361 |||||||||||||||||||||| | |||| |||||| | |||||||||||| |||||| Sbjct 3034665 TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCT 3034724 Query 61362 GCACG 61366 ||||| Sbjct 3034725 GCACG 3034729 >seq83 Length=912621 Score = 82.4 bits (90), Expect = 4e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 61302 TCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGCAGGTTCAAATCCT 61361 |||||||||||||||||||||| | |||| |||||| | |||||||||||| |||||| Sbjct 700909 TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCT 700968 Query 61362 GCACG 61366 ||||| Sbjct 700969 GCACG 700973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234906868116602