Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq122 289 3e-73 seq83 230 3e-55 >seq122 Length=4874392 Score = 289 bits (320), Expect = 3e-73 Identities = 447/631 (71%), Gaps = 14/631 (2%) Strand=Plus/Plus Query 41146 CCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTA 41205 || ||||| |||||| | || ||||| || || ||||| |||||| | || || | Sbjct 2805880 CCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTG 2805939 Query 41206 ATCGAATCTGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCC---GCGATCGTGAAA 41262 || || | || || || | ||| | ||||| || ||| ||||| ||||| Sbjct 2805940 ATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCC---ACCTCCAGCGCGATTGTGAAG 2805996 Query 41263 TATATCTCTCAACGTGCGGGTATCGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCA 41322 || | ||||| ||||| |||||||| | |||||||| | ||| || || |||| Sbjct 2805997 TACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGC 2806056 Query 41323 AAAATCCGTGGTGGTGAAGCAGTCCATACAGGCGTTATCCCGTTCTGGAAACACATTCAG 41382 ||||| || ||||||||| |||| || ||| || ||||||| || ||| | ||| Sbjct 2806057 CCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCACTTCCAG 2806116 Query 41383 ACGGCGGTTAAATCTTGTTCCCAGGGTGGCGTTCGTGGTGGTGCAGCAACCCTGTATTAT 41442 || ||||| || || || || ||||| ||||| || || |||||||| ||||||| || Sbjct 2806117 ACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTAC 2806176 Query 41443 CCGATCTGGCATCTTGAAGTTGAAAACCTGCTGGTTCTGAAAAATAACCGTGGCGTTGAA 41502 || || |||||||| ||||| |||| ||||||||| ||||| || ||||| ||||||||| Sbjct 2806177 CCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAA 2806236 Query 41503 GAAAACCGTATTCGTCACCTGGACTATGGCGTACAGCTTAACGATTTGATGTATAAGCGT 41562 | ||||| | ||||| ||||||| ||||| ||||| ||| | |||||||| |||| Sbjct 2806237 GGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCTGATGTATCAGCGC 2806296 Query 41563 TTAATCAATAACGATTACATCACTCTGTTCAGCCCTGACGTTGCGAATGATCGCCTCTAT 41622 | | || || | || |||||||||||||| || | | || || | ||| Sbjct 2806297 CTGCTGAAGGGTGAAGAGATTACTCTGTTCAGCCCGTCCGACGTGCCTG---GCTTGTAT 2806353 Query 41623 GACGCGTTCTATCAAGCGGATCAGACTGAGTTTGAAGAACTCTATACCAGTCTGGAAAAA 41682 |||||||||| || || |||||| ||||||||| || || |||| || ||| Sbjct 2806354 GACGCGTTCT-TC--GCCGATCAGGATGAGTTTGAGCGCCTGTACACCAAATACGAGAAA 2806410 Query 41683 GAC-CCAGCGGTACGCAAGAAACGTATTAAAGCGGTAGATCTGTTCCAGTTGCTTGTTCA 41741 ||| |||| | |||||| | || | || ||||||||||||||| | || | | || Sbjct 2806411 GACGACAGC-ATCCGCAAGCAGCGCGTGAAGGCGGTAGATCTGTTCTCGCTGATGATGCA 2806469 Query 41742 GGAACGCGCACAGACCGGACGCAAATACATT 41772 ||||||||| ||||| || | |||||| Sbjct 2806470 GGAACGCGCCTCTACCGGCCGTATCTACATT 2806500 Score = 185 bits (204), Expect = 1e-41 Identities = 591/904 (65%), Gaps = 27/904 (3%) Strand=Plus/Plus Query 154832 TCCCTACACAGCGTGATTTGCTGGCGGGTATTGTAGCGAAGCATTTCGCCCGTAATCATA 154891 |||| || ||||| ||| ||||||| || || || || || || | ||||||| | |||| Sbjct 3819959 TCCCCACTCAGCGCGATCTGCTGGCCGGGATCGTCGCCAAACACTACGCCCGTCAGCATA 3820018 Query 154892 TCCTTCCGAAACATATCGTAGAAGCGCATGACTCCGGCGACATCCATTATCACGATCTGG 154951 | || ||| || | || || ||||| |||||| ||||| ||||||||||| | Sbjct 3820019 TGCTGCCGCGTGATGTGGTCAGCGCCCATGAGCGCGGCGAGATCCACTATCACGATCTCG 3820078 Query 154952 ACTATAGCCCGTTCACCCCTTACACTAACTGCTGTCTGGTTGACCTGAAAGGTATGCTTG 155011 |||| ||||| ||| ||||||| ||| | |||||| || ||||| Sbjct 3820079 ACTACTCGCCGTTTTTCCCGATGTTTAACTGCATGCTGATCGACCTGCGGGGCATGCTGA 3820138 Query 155012 AGAACGGTTTCAAGATGGGTAACGCGGACATTGAACCGCCTAAATCGATCGGTGTTGCTA 155071 | |||| ||||| ||||||||||| || || ||||||||||| |||||| || | Sbjct 3820139 CGCACGGCTTCAAAATGGGTAACGCCGAGATCGAACCGCCTAAGTCGATCTCCACCGCCA 3820198 Query 155072 CCGCTCTCATGGCGCAGATCACCGCACAGATTGCCTCTCACCAGTACGGCGGGACAACCT 155131 |||| ||| |||||||||| ||| ||| | ||| || ||||| || || ||| Sbjct 3820199 CCGCCGTCACCGCGCAGATCATCGCCCAGGTCGCCAGCCATATTTACGGGGGCACCACCA 3820258 Query 155132 TT--GCGAACGTTGATAAAGTGCTGGCTCCATACGTAGAAATGACATTCT-TCAAACATC 155188 || || | ||||| |||||||||| || | ||| | ||| || || |||| | Sbjct 3820259 TTAACCGTA--TTGATGAAGTGCTGGCGCCGTTCGTGG--ATGCCAGCCTGGCAAAACAC 3820314 Query 155189 TGCGCGA-TGCTGAACATTATGGTATCGAACACTATAACGATTATGTGTATGCAATCGAG 155247 |||| | || || | |||| | || | ||| | | ||||| || | Sbjct 3820315 CGCGCCACCGCCGACGA--ATGGCA--GATTGC--CGACGCCGAAGCCTATGCCCGCGCG 3820368 Query 155248 AAGACCGAAAAAGATGTATTCGATGCGTTCCAGTCCTATGAGTATGAAGTGAATACCCTG 155307 ||||||||||| | ||| || || ||||| |||||||| || ||||| ||| Sbjct 3820369 CGCACCGAAAAAGAGTGCTACGACGCCTTTCAGTCGCTGGAGTATGAGGTCAATACGCTG 3820428 Query 155308 CATACTGCCAACGGGCAAACCCCGTTTGTTACCATCACTTTCGGTACTGGTACAAGCGAC 155367 || || |||||||| || || |||||||| ||| || ||||| || || ||| Sbjct 3820429 CACACCGCCAACGGCCAGACGCCGTTTGTCACCTTCGGCTTCGGCCTCGGCACCAGCTGG 3820488 Query 155368 TATGAACGCATGATCCAGAAAGCGATTCTGAAAAATCGTATTCGCGGCCTGGGTAAAGAG 155427 | ||| |||||||| | |||| ||| || || || ||| ||||||||| | Sbjct 3820489 GCAGCGCGCCTGATCCAGCAGTCGATCCTGCGTAACCGCATCGCCGGGCTGGGTAAAAAT 3820548 Query 155428 GGTATCACTCCGGTATTCCCTAAACTGGTTATGTTCATGGAAAAAGGAATCAACCTTGAT 155487 | ||| | || || || || ||||| | ||| || || | |||| | Sbjct 3820549 CACAAAACTGCCGTGTTTCCCAAGCTGGTGTTCGCCATCAAAGCCGGGCTGAACCACCGT 3820608 Query 155488 CCAGAGGATCAGAACTATGACATCAAACAACTTGCCCTTGAATGTGCTTCGAAACGCATG 155547 | | || | || || || |||||||| || || || || || || ||||||||| Sbjct 3820609 CGCGGCGAGCCAAATTACGATATCAAACAGCTGGCGCTGGAGTGCGCCAGTAAACGCATG 3820668 Query 155548 TACCCAGATATCATTAGTTCAGCTAATAACCGCGCTATTACTGGTTCTAGCGTTCCTGT- 155606 ||||| |||||| | | || || ||| | | | | || || |||| | | Sbjct 3820669 TACCCCGATATCCTCAATT------ATGACC-AGGTGGTGCAGG-TCACCGGTTCGTTTA 3820720 Query 155607 -ATCTCCTATGGGTTGTCGCAGTTTCCTTAGCGTGTGGCATGATGATAACGGTAATGAAA 155665 | | || ||||| || ||||| ||||| |||||| || | || ||||| | | | Sbjct 3820721 AAACGCCAATGGGCTGCCGCAGCTTCCTCGGCGTGT---ATCAGGAGAACGGGGAACAGA 3820777 Query 155666 TTCTGGATGGACGTAATAATCTGGGTGTGGTGACAATCAACCTCCCACGTATTGCGATCG 155725 | | || || || |||||| | || ||| | | ||||||| || || ||||| | | Sbjct 3820778 TCCACGAGGGGCGCAATAATATTGGCGTGATTAGCCTCAACCTGCCGCGCATTGCCCTGG 3820837 Query 155726 AAGC 155729 |||| Sbjct 3820838 AAGC 3820841 Score = 118 bits (130), Expect = 1e-21 Identities = 178/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 40053 CGCGGGATCATCGTTTCCGCCTGGAACCCTGTTGATCTTGATGATATGGCTTTGCGTCCG 40112 ||| | ||||||||||| || |||||| | || || ||||| ||||| || ||| Sbjct 3442467 CGCCGCATCATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCG 3442408 Query 40113 TGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAG 40172 || ||| |||||||||||| ||| |||| || || || || ||||||| Sbjct 3442407 TGCCACGCGTTCTTCCAGTTCTACGTTGCGGACGGCAAGCTCTCCTGCCAACTGTATCAG 3442348 Query 40173 CGTTCAGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACG 40232 || || ||| ||||| | || ||||||||||||||||| ||||||| | ||| | Sbjct 3442347 CGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATCGCCAGCTACGCTTTGCTGGTG 3442288 Query 40233 CATATTATCGCTGATATTTGCGGGTATGAAGTGGGTGATCTGGTTTGGACTGGTGGCGAT 40292 ||||| || || | |||| |||||||||||| | || ||||| ||||||||| Sbjct 3442287 CATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGATTTTGTCTGGACCGGTGGCGAT 3442228 Query 40293 GTCCATATCTACA 40305 |||| | |||| Sbjct 3442227 ACCCATCTGTACA 3442215 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 43933 GTCAACGCTCTGGAAGCGATCCGCTTCTACGTGTCGTTTACCTTCACGTTCAACTTTGCC 43992 |||||||| ||||||||||||||||| ||||| || ||| | | ||| ||||||| Sbjct 2808236 GTCAACGCGCTGGAAGCGATCCGCTTTTACGTCAGCTTCGCCTGCTCTTTCGCCTTTGCC 2808295 Query 43993 GAACAAGGTAAGATGGAAGGTAACGCGAAGATCATGCGTCTGATTGCCCGTGATGAAGCA 44052 || | | ||||||||| || || || ||||| ||||| ||||| |||||||| Sbjct 2808296 GAGCGCGAACTGATGGAAGGCAATGCCAAAATCATTAAGCTGATCGCCCGCGATGAAGCT 2808355 Query 44053 CTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG--GCAAATGGGTAAAGACGACC 44110 || || | || || |||| |||| | || ||| || | || ||||||| | Sbjct 2808356 CTGCACCTGACCGGCACTC--AGCATATGCTGAACCTGCTGCGCAGTGGGGAAGACGATC 2808413 Query 44111 CAGAAATGGCAGAAATCGC 44129 | |||||||| || || || Sbjct 2808414 CGGAAATGGCCGAGATTGC 2808432 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 49778 TCCGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTC 49837 || ||||| ||||| | ||||||||||| | ||||||||||||| ||| |||||||| Sbjct 217251 TCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTC 217192 Query 49838 GAATCCAGCAGGGGCCACCAAAT 49860 | |||||| |||||||||| || Sbjct 217191 AAGTCCAGCTGGGGCCACCAGAT 217169 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 156181 GGGGTCACGGATAAAGGCTGGTATACAAACAGTTTCCATCTGGACGTTGACCGCAAGGTA 156240 || ||||| || ||||| | || || ||||| ||||| || |||||||| ||||| Sbjct 3821281 GGCGTCACCGACAAAGGTTACTACACCAACAGCTTCCACCTCGACGTTGAGAAAAAGGTT 3821340 Query 156241 ACACCGTTCGAGAAAATCGACTATGAAGCCGATTATCATTACATCGCTACTGCTGGTCAT 156300 | |||| ||| |||||||||| |||||| | |||| ||||| | | ||| | Sbjct 3821341 AATCCGTACGACAAAATCGACTTTGAAGCGGGCTATCCGCCGATCGCCAACGGCGGTTTT 3821400 Query 156301 ATCAGTTATGTTGAATTCCCTGATATGAAAAACAACCTGCAAGCCCTGGAAAAAGTCTGG 156360 ||| | || | || | ||| |||| | | |||||| | || ||||| | |||||| Sbjct 3821401 ATCTGCTACGGCGAGTACCCGAATATCCAGCATAACCTGAAGGCACTGGAGGACGTCTGG 3821460 Query 156361 GATTA 156365 ||||| Sbjct 3821461 GATTA 3821465 >seq83 Length=912621 Score = 230 bits (254), Expect = 3e-55 Identities = 309/430 (72%), Gaps = 0/430 (0%) Strand=Plus/Plus Query 41133 TAAACTGTCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTC 41192 |||| | || ||||||||||| || ||||| || || || || || || || || ||| Sbjct 579769 TAAAATTTCCTTACCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAG 579828 Query 41193 CAGTTGTGTTGTAATCGAATCTGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCCGC 41252 | || || | ||||| | ||| ||| | | ||| | ||||| | | || Sbjct 579829 CTCATGCGTGCTTATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCCACTTCTAGTGC 579888 Query 41253 GATCGTGAAATATATCTCTCAACGTGCGGGTATCGGTGTCAACGCCGGACACATTCGCGC 41312 ||||| ||||| | || ||||| || || |||||| |||| || || | ||||| || Sbjct 579889 TATCGTTAAATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGC 579948 Query 41313 TATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTCCATACAGGCGTTATCCCGTTCTGGAA 41372 | || |||||||||||||||||| ||||||| || ||||||||||| || Sbjct 579949 GCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAA 580008 Query 41373 ACACATTCAGACGGCGGTTAAATCTTGTTCCCAGGGTGGCGTTCGTGGTGGTGCAGCAAC 41432 |||| | |||||||| || |||||||| || || || ||||| || || ||||| || || Sbjct 580009 ACACTTCCAGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGAC 580068 Query 41433 CCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGCTGGTTCTGAAAAATAACCG 41492 |||| ||| || || ||||| | ||| |||||| | | | || |||||||||||||| Sbjct 580069 ACTGTTTTACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCG 580128 Query 41493 TGGCGTTGAAGAAAACCGTATTCGTCACCTGGACTATGGCGTACAGCTTAACGATTTGAT 41552 ||| ||||||| |||||| | |||||||| || || |||||||| | ||| | | || Sbjct 580129 TGGTGTTGAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCAT 580188 Query 41553 GTATAAGCGT 41562 |||| | ||| Sbjct 580189 GTATCAACGT 580198 Score = 113 bits (124), Expect = 5e-20 Identities = 291/435 (67%), Gaps = 20/435 (5%) Strand=Plus/Plus Query 42304 GACTGGGAATGGTTACGCGGTGAAATCAAAAAACATGGCTTGCGTAACTCAACACTTTCT 42363 || |||||| | ||||| | |||||||| | ||||||||| ||||||||||| ||||| Sbjct 580952 GATTGGGAAAGCTTACGTGAAGAAATCAAGACACATGGCTTACGTAACTCAACGCTTTCA 581011 Query 42364 GCTTTAATGCCTTGTGAAAGTAGCTCACAGGTGAGTAACTCAACCAACGGGATCGAACCT 42423 || || ||||| | |||| || ||| | ||| | || ||||| ||||| ||| Sbjct 581012 GCATTGATGCCATCAGAAACCTCTTCGCAGATTTCTAATGCTACAAACGGTATCGAGCCT 581071 Query 42424 CCACGCGGCCCTGTGAGTGTGAAATCTTCTAAGGAAGGTTCATTCAATCAGGTAGTACCG 42483 ||||||||| ||| ||| | ||| | || || || ||| || |||||| || Sbjct 581072 CCACGCGGCTATGTCAGTATCAAAGCCTCGAAAGACGGTATTTTACGTCAGGT-----CG 581126 Query 42484 AACCAGAATAATCAGATTGACTTCTATGAT---TAT-CTCTGGACAATGGCAAA-ACGCG 42538 ||||| | || || ||| | ||| ||| ||| | |||| ||| | Sbjct 581127 TTCCAGAGT-ATGAG---CGCTTACAAGATCAGTATGAGCTG--CTATGGGAAATGCCTT 581180 Query 42539 GAAATAAAGGTTATCTGGCTCACGTAGCGGTTATGCAGAAGTTTGTTGATCAGGCTATCT 42598 || | ||||| | | || | | |||||||||||||||| || || ||||||| Sbjct 581181 CTAACGATGGTTACTTACAACTTGTCGGGATTATGCAGAAGTTTGTCGACCAAGCTATCT 581240 Query 42599 CTGCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGT--GAAATCTGAAAT 42656 || ||||||||||||| |||||| | | | | | || ||||| | | | | | Sbjct 581241 CTTCAAACACCAACTACGATCCGACACGTTACACTGGCGGGAAAGTACCGATGCAGCAGT 581300 Query 42657 CATCCTTGAAGATCTGCTGTATGCAAACTATTTCGGCATCAAAACGCTGTACTACCACAA 42716 | || |||| |||||| || | | |||||| | |||||||| ||||| || || Sbjct 581301 --TACTGAAAGACCTGCTGACCGCGTATAAATTCGGCGTGAAAACGCTTTACTATCAAAA 581358 Query 42717 CACCCGCGACGGTGC 42731 ||| || || ||||| Sbjct 581359 CACGCGTGATGGTGC 581373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565549321091040