Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_014595.1 Length=170605 Score E Sequences producing significant alignments: (Bits) Value seq83 141 1e-28 seq122 129 6e-25 >seq83 Length=912621 Score = 141 bits (156), Expect = 1e-28 Identities = 312/463 (67%), Gaps = 6/463 (1%) Strand=Plus/Minus Query 142911 CCAGACGTTCCATCATCAGGTTATTCAGCTGGACACCATAGTCCATATGTCTGATGCGGT 142970 ||||||||| ||| || || || | || || || || || | || | || |||| Sbjct 580202 CCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGT 580143 Query 142971 TTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAAA 143030 | ||||||| || ||| || ||||| || | ||| |||||| |||||| ||||| | Sbjct 580142 TACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACA 580083 Query 143031 TAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAG 143090 |||| ||| | || || || || || || | || ||||| || || ||||| || | Sbjct 580082 TAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGG 580023 Query 143091 CCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGCTTAACTTCGCCCATACCGA 143150 |||| ||||| ||||| ||||||| ||| ||| ||||| | |||| || || || Sbjct 580022 CCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGA 579963 Query 143151 TTTTCGAACCTTCGGCACGAATCATGCCAACGTTGATACCGATACCTGCACGCTTACTGA 143210 || ||| |||||||| |||| | ||||||||||| ||||| || | ||| Sbjct 579962 TTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTG--TGA 579905 Query 143211 TA--TATTCGATGATTGAATTAGCAGTCTTATTAATTGACTTCAGGGAGTCAGCCGCT-T 143267 | |||| | ||| | | ||| ||| || || || | | | || ||| | | Sbjct 579904 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATC-GCCACACT 579846 Query 143268 CGATAACCACGCAGGAACTGAACTGTCTGGTAGGTGTTCTGGCGCCGGCCATGATAGGCG 143327 |||||| |||||| || ||||| || | || || || | | || |||||||| |||| Sbjct 579845 CGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCG 579786 Query 143328 TGGGCAACGAAACCTGTCGAGTGGATACTGCATCATAAAAACG 143370 | || || |||| | || || || ||||||||||| || Sbjct 579785 TAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCG 579743 >seq122 Length=4874392 Score = 129 bits (142), Expect = 6e-25 Identities = 331/499 (66%), Gaps = 14/499 (3%) Strand=Plus/Minus Query 142879 CGGACTAAACAGAGTGATGTAATCATTCTTAGCCAGACGTTCCATCATCAGGTTATTCAG 142938 ||| || |||||||| || | ||| ||| ||| || | |||||| || ||||| Sbjct 2806332 CGGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAG 2806273 Query 142939 CTGGACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTCTTCAG 142998 ||| || || ||||||||||| | | |||||| |||||||||| |||||||||||| Sbjct 2806272 CTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAG 2806213 Query 142999 AACGAGTAAATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 143058 || || | |||| ||||||| |||||| || || || | || || || ||||| Sbjct 2806212 CACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCC 2806153 Query 143059 ACGGATTCCACCTTGTGAACATGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAAT 143118 || | || || || || || || || || || || ||||| || || |||||||||| Sbjct 2806152 GCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT 2806093 Query 143119 AACACCAGT-----ATGCTTAACTTCGCC-CATACCGATTTTCGAACCTTCGGCACGAAT 143172 || || |||||| || |||| | | || | | | | ||||| || Sbjct 2806092 GCAGCCGGTGTGGAATGCTTCAC--CGCCGCGGATCGGGCTGCCCAGC----GCACGGAT 2806039 Query 143173 CATGCCAACGTTGATACCGATACCTGCACGCTTACTGATATATTCGATGATTGAATTAGC 143232 || |||| || |||||||| ||||||| | | || | | || | | | Sbjct 2806038 GCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGA 2805979 Query 143233 AGTCTTATTAATTGACTTCAGGGAGTCAGCCGC-TTCGATAACCACGCAGGAACTGAACT 143291 || ||||| || | ||| ||| ||||| || || | |||||||| ||||||| Sbjct 2805978 GGTGGCGTTAATGGAATCAAGGCTGTC-GCCGCACTCAATCAGTACGCAGGAGCTGAACT 2805920 Query 143292 GTCTGGTAGGTGTTCTGGCGCCGGCCATGATAGGCGTGGGCAACGAAACCTGTCGAGTGG 143351 | | || || || | |||||| ||| || ||||| |||| ||||| || |||| Sbjct 2805919 GGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGG 2805860 Query 143352 ATACTGCATCATAAAAACG 143370 | | ||||| || ||||| Sbjct 2805859 AGATCGCATCGTAGAAACG 2805841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545765270056200