Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq122 179 5e-40 seq3434 84.2 3e-11 >seq122 Length=4874392 Score = 179 bits (198), Expect = 5e-40 Identities = 292/417 (70%), Gaps = 10/417 (2%) Strand=Plus/Minus Query 129056 ACATCAGCTTATTGATTTGGATACCGTAGTCAAGATGTCGGATTCGGTTTTCTTCAACGC 129115 |||||||||| || | || | |||||||| | ||| || | ||||| ||||||||| Sbjct 2806288 ACATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGC 2806229 Query 129116 CCTTGTTATTCTTGAGCACAAGGATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATA 129175 | ||| ||||| ||||| || | |||| ||||| || |||||||||||||| | | Sbjct 2806228 CGCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACA 2806169 Query 129176 GAGTTGCGGCACCGCCGCGAACACCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGT 129235 | || || ||||||||||| || || ||||| || ||| ||| ||||| |||||||||| Sbjct 2806168 GGGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGT 2806109 Query 129236 ATTTCCAAAATGGGATAATACCGGTATGTCGCACTTCACCGCTACGAATGCGAGATCCCT 129295 || | || || || ||||| || ||||||||| || || || | | || Sbjct 2806108 GCTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGAT-CGGGCTGCCC 2806050 Query 129296 CG-GCACGAATCGCACCGCCGTTGATGCCGATACCAGCGCGTTTGCTGATA----TAGTC 129350 | ||||| || |||| |||| ||||||||||| || | ||||| | || | Sbjct 2806049 AGCGCACGGATGCGACCGGCGTTAATGCCGATACCGGCAC----GCTGAGAAACGTACTT 2805994 Query 129351 AACGATAGAACTAGCGGTAGCGTTGATGCTATCCAGTTCGTCTCCACATTCGATCTTGAC 129410 || || | || | ||| ||||| ||| ||| || ||| || || || ||| || Sbjct 2805993 CACAATCGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTAC 2805934 Query 129411 ACAAGAGCTAAACTGCCGAGTCGGGGTGCGAACACCTGCGAGAATCGGAGTTGGCAG 129467 || ||||| ||||| || ||||||||||| || || | | ||| || || ||||| Sbjct 2805933 GCAGGAGCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAG 2805877 Score = 140 bits (154), Expect = 5e-28 Identities = 226/314 (72%), Gaps = 12/314 (4%) Strand=Plus/Minus Query 126918 CTCAACAGATCACGCGCCCATTCTTTTTCTTGTTCGGCAGCGTCCA-GAAAA-ATCTGAA 126975 || ||||||| |||||| ||||| || || |||||||| || ||| | ||| | Sbjct 2808513 CTGAACAGATATTCCGCCCACTCTTTCTCCTGCTCGGCAGCCAGCACGAACAGATCGTAG 2808454 Query 126976 CAGCCTTTGACTCAAGACGTTTAGCAATATCAACCATTTCTGGGTCATCTTCGCCGTTTT 127035 || ||| ||| | | ||||||||| || ||||||| || || ||||| || | Sbjct 2808453 CACTCTT-GACGGCACTC-TTTAGCAATCTCGGCCATTTCCGGATCGTCTTCCCCACTGC 2808396 Query 127036 GC--CAAGTGC-GAATTTGATACTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAA 127092 || || || | | || || ||| ||||| | ||||||| |||||| || || | Sbjct 2808395 GCAGCAGGTTCAGCATATG---CTGAGTGCCGGTCAGGTGCAGAGCTTCATCGCGGGCGA 2808339 Query 127093 TCAGTTTCATGATCTTAGCGTTGCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGC 127152 |||| || ||||| || || ||||||||||||| |||| |||||||| | ||| | || Sbjct 2808338 TCAGCTTAATGATTTTGGCATTGCCTTCCATCAGTTCGCGCTCGGCAAAGGCGAAAGAGC 2808279 Query 127153 AGGCGAAGCTTACATAAAAACGAATCGCTTCCAAAGCGTTTACCGCGTGTTTGGCGAGAT 127212 |||||||||| || ||||| || |||||||||| ||||| | ||| | ||| |||| Sbjct 2808278 AGGCGAAGCTGACGTAAAAGCGGATCGCTTCCAGCGCGTTGA-CGCTCATCAGGC-AGAT 2808221 Query 127213 ACAGAGCTTCTTTT 127226 | |||||| ||||| Sbjct 2808220 ATAGAGCTGCTTTT 2808207 Score = 134 bits (148), Expect = 2e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 124645 CTTCGTCAATGCGATTAATTGTGTTGCCACCATAAATGTGACTTGCAACCTGTGCAATGA 124704 |||| ||||| || ||||| ||| |||| || ||||| || || || ||||| || |||| Sbjct 3820276 CTTCATCAATACGGTTAATGGTGGTGCCCCCGTAAATATGGCTGGCGACCTGGGCGATGA 3820217 Query 124705 TTTGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCTTAGGAGTTTCGATCTGTGCATTAC 124764 | || || || || || | ||||| | ||| |||||| | |||||||| || |||| Sbjct 3820216 TCTGCGCGGTGACGGCGGTGGCGGTGGAGATCGACTTAGGCGGTTCGATCTCGGCGTTAC 3820157 Query 124765 CCATGCGGAACCCACGCTCTAACATGCCGTTGAGATCAATCAACATGCAGTTAAACATTG 124824 |||| ||| || || | |||||| || || |||| ||||||||||||||| | Sbjct 3820156 CCATTTTGAAGCCGTGCGTCAGCATGCCCCGCAGGTCGATCAGCATGCAGTTAAACATCG 3820097 Query 124825 GGAAGAACGGAGAGTAATCAAGATCATGGAAGTGAAT 124861 |||| ||||| ||||| || ||||| || |||| || Sbjct 3820096 GGAAAAACGGCGAGTAGTCGAGATCGTGATAGTGGAT 3820060 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 191313 AAATTGGCGGGGGTAGCTGGACTCGAACCAGCGAATGACGGAATCAAAATCCGTTGCCTT 191372 ||| |||| |||||| ||||| ||||||||| ||||| ||| ||||||| ||| |||||| Sbjct 930400 AAAATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTT 930459 Query 191373 TCCAACTTGGCGATACCCC 191391 || |||||||||||||| Sbjct 930460 ACCG-CTTGGCGATACCCC 930477 >seq3434 Length=6334 Score = 84.2 bits (92), Expect = 3e-11 Identities = 77/96 (80%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 189955 TATTTATCTGGTGCGGATGGTCGGACTCGAACCGACACGCCTAT-GGCGCTAGAACCTAA 190013 |||||| ||||||||| || |||| |||| ||| ||| ||||| ||||||||| Sbjct 5668 TATTTAAATGGTGCGGAAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAACCTAA 5609 Query 190014 ATCTAGTGCGTCTGCCAATTTCGCCACATCCGCGTT 190049 |||| |||||||| ||||||||||||| ||||| || Sbjct 5608 ATCTGGTGCGTCTACCAATTTCGCCACTTCCGCATT 5573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720673175881440