Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq64 140 1e-27 seq326 125 3e-23 seq20 116 1e-20 seq742 98.7 4e-15 seq43 98.7 4e-15 seq19 87.8 7e-12 seq11 86.0 2e-11 >seq64 Length=1295264 Score = 140 bits (154), Expect = 1e-27 Identities = 258/376 (69%), Gaps = 3/376 (1%) Strand=Plus/Minus Query 451230 CTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAG 451289 |||| ||||| ||||| ||| ||||||||||||| || || || ||||| || || | Sbjct 191868 CTAAGACTTTCTACCCTGAGGAAGTTTCATCTATGGTCCTCACAAAGATGAAGGAGACTG 191809 Query 451290 CAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCA 451349 | ||| ||| |||| | || || | || ||| | || || ||||| ||||||| Sbjct 191808 CGGAAGCATACCTTGGCAAGACTGTCACCAACGCCGTAGTCACCGTACCCGCATATTTCA 191749 Query 451350 ATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTC 451409 ||||| | || || || || || || ||||| || ||||||| | || || || | Sbjct 191748 ATGATTCTCAGCGTCAGGCCACCAAGGATGCTGGTACCATTGCTGCACTGAACGTCCTCC 191689 Query 451410 GAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAA 451469 | ||||| || || || || || ||||| | || ||||| || | | | || | | Sbjct 191688 GTATTATCAACGAGCCCACTGCTGCTGCCATCGCTTATGGTCTCG--ACAAGAAGGGCAG 191631 Query 451470 CAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTAC 451529 || | || | ||| | | | || ||| ||||||| || ||| |||| || | | Sbjct 191630 CA-AGGAGAGCAATGTCCTCATTTTCGATCTTGGTGGTGGTACTTTTGATGTGTCCATCC 191572 Query 451530 TTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAG 451589 | | ||||||||||| | |||||||| ||| | ||| |||||| || ||||| || | Sbjct 191571 TGACCATTGAAGATGGTATCTTTGAAGTCAAGTCCACCGCTGGTGACACCCATCTTGGTG 191512 Query 451590 GTGAAGATATTGATAA 451605 |||||||| | || || Sbjct 191511 GTGAAGATTTCGACAA 191496 >seq326 Length=250163 Score = 125 bits (138), Expect = 3e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 451251 AAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC 451310 |||| ||| || ||||| | |||||||| ||||||| ||| | || | ||| | Sbjct 174759 AAATCTCAGCTGAAGTTCTGAAGAAAATGAAGAAAACAGCGGAAGACTACTTGGGTGAGC 174818 Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 |||| ||||| || || || ||||| || || || ||||| ||||| ||||| ||||||| Sbjct 174819 CAGTGACTGAAGCCGTTATCACTGTACCGGCATACTTCAACGATGCGCAACGTCAAGCAA 174878 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 |||||||||| || | ||| || || ||| | ||| || || || || ||||| |||| Sbjct 174879 CTAAAGATGCTGGCCGTATCGCAGGGTTAGAAGTTAAGCGTATCATCAACGAACCAACAG 174938 Query 451431 CAGCTGCTCTAGCATATGG 451449 | || || || || ||||| Sbjct 174939 CCGCAGCGCTGGCGTATGG 174957 >seq20 Length=3083928 Score = 116 bits (128), Expect = 1e-20 Identities = 188/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 420693 AATAATAACTTCCCCAAATGTATCAATTCCTCTTCTTCCAGCTCGTCCTGCCATTTGAAG 420752 ||||||||| | |||| ||| | ||||| |||||||||| ||||||||||||| Sbjct 1651510 AATAATAACATTTCCAACACGATCTTTACCTCTCCTTCCAGCTCTACCTGCCATTTGAAT 1651569 Query 420753 AAATTCATCAGTTCGTAAGAATCTTCTACCACAATCATCATATTTAGATAATCCAGT-AA 420811 |||| ||| || ||| | || | ||||||||||| ||| ||| || Sbjct 1651570 GTATTCTCCAGGATATAGATGTCTCCACTCAACACCATCATATTTACG-AATGGAGTCAA 1651628 Query 420812 ATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAACA-AA 420870 | | ||| | | |||| |||||||| ||||| | || ||||||||||||||| |||| | Sbjct 1651629 AGATAACTGATCTTGTTGGCATATTCACACCCATAGCAAAAGTTTCAGTTGCAAACAGCA 1651688 Query 420871 ACTTTAATTAAtttttttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAATTATA 420930 | |||| || | ||||| | || ||||| ||||||||||| ||||| || | || Sbjct 1651689 ATTTTACCAAACCATCTTGAA-AGAGCATTTCTACAATTTCTTTCAAAATTGGCAGAATT 1651747 Query 420931 CCAGAATGATGATATGCCACACCTC 420955 ||| ||||||| | | | ||||| Sbjct 1651748 CCACTATGATGAACTCCAATACCTC 1651772 >seq742 Length=32635 Score = 98.7 bits (108), Expect = 4e-15 Identities = 137/192 (71%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 |||||||||||||| || || || ||||| ||| |||| || | ||| |||| ||| Sbjct 15745 GCAGTAATTACTGTGCCAGCCTACTTCAACGATACACAGCGTAAGGCAGTGAAAGCCGCA 15686 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || || || ||||| ||| ||| || || ||||||||||||||||||| || ||| Sbjct 15685 GGGCAGATGGCTGGGCTAACTGTAGAGCGTCTTCTTAATGAACCTACAGCAGCAGCGCTA 15626 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || || ||| ||| | | | |||| || ||||| || | || |||||||| Sbjct 15625 GCCTACGGAATAGCAGATGCCAAAG-------AGCAAAAA--TTTCTGGTCTTTGATTTG 15575 Query 451502 GGTGGAGGAACT 451513 ||||| || ||| Sbjct 15574 GGTGGTGGTACT 15563 >seq43 Length=2082672 Score = 98.7 bits (108), Expect = 4e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || ||||| ||||| || || |||||||| || |||||| | || Sbjct 901073 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATTACTCTGGAAGTTGAACCCTC 901132 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||| | || ||||| ||||| || ||||| || || || ||||| Sbjct 901133 TGATTCTATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGCATCCCCCCAGATCA 901192 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||||| || || | || || || ||||||||||| | || ||| | || || || Sbjct 901193 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCTGACTACAA 901252 Query 391229 TATTGATAAGGA 391240 ||| | ||||| Sbjct 901253 TATCCAGAAGGA 901264 >seq19 Length=2947477 Score = 87.8 bits (96), Expect = 7e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || || |||||||| || || | || Sbjct 340748 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGCCCTCA 340689 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 ||| |||||| | | || || ||||| || |||||||| || || || || || Sbjct 340688 GATTCCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAG 340629 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || ||||||||||| || || ||| | || || ||| Sbjct 340628 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGCAGGACATTGTCTGACTACAAT 340569 Query 391230 ATT 391232 ||| Sbjct 340568 ATT 340566 >seq11 Length=3525032 Score = 86.0 bits (94), Expect = 2e-11 Identities = 168/247 (68%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || ||| |||| || | || || || || || ||||||||||| || || |||||||| Sbjct 608833 GTCACTCATGCTGTTGTCACCGTCCCTGCCTACTTCAATGATGCCCAGCGTCAAGCAACC 608892 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || || |||| | |||||| | || ||||| ||||| ||||| || Sbjct 608893 AAGGATGCTGGTACCATCTCTGGCCTGAATGTTATGCGTATTATCAATGAGCCTACTGCT 608952 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 |||||| | || || || | ||| || | | || ||||| ||| | | || Sbjct 608953 GCTGCTATTGCCTACGG-GTTGGACAAGCGTGA-----AGGCGAAAAGAATGTCCTTGTT 609006 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 || ||| |||| || || ||| |||| || | || | ||||| |||| || ||| Sbjct 609007 TTCGATCTTGGCGGTGGTACTTTTGATGTCTCCCTGCTGACCATTGATAATGGTGTCTTT 609066 Query 451553 GAAGTAA 451559 || |||| Sbjct 609067 GAGGTAA 609073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975559859094404