Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq83 158 1e-33 seq122 156 4e-33 >seq83 Length=912621 Score = 158 bits (174), Expect = 1e-33 Identities = 300/438 (68%), Gaps = 8/438 (2%) Strand=Plus/Minus Query 141456 TTGATTTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTC 141515 |||||||| | ||| ||||| | |||||| | |||||| |||||||||| ||| || Sbjct 580179 TTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTT 580120 Query 141516 TTCAACACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAA 141575 |||| || | ||| |||| | ||| | ||||||||||||| | |||| ||| || | | Sbjct 580119 TTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCA 580060 Query 141576 CCTTTACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAA 141635 || || | || ||||| || || | | || || | | ||||| || |||| Sbjct 580059 CCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAAC 580000 Query 141636 GGTACTAC-GCCAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAAT 141694 || | ||| || || || |||| || | ||| ||| || ||||| Sbjct 579999 GGGA-TACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAAT 579941 Query 141695 CATGCCTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGC---AGA 141751 ||| || || || ||||| ||||| || | ||||| || ||||| ||||| ||| Sbjct 579940 ACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGA 579881 Query 141752 GTTTGCATCATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAA 141811 | | | ||||| ||||| | ||| || ||| | || |||| || ||||| ||||| Sbjct 579880 AGTGG---CGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAA 579824 Query 141812 TTGACGAGTTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGT 141871 ||| ||||| || || || || |||||||| ||||| ||||| || || |||||| || Sbjct 579823 TTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGT 579764 Query 141872 TGAAACAGCTTCATAAAA 141889 || || || |||||||| Sbjct 579763 CGACACGGCATCATAAAA 579746 >seq122 Length=4874392 Score = 156 bits (172), Expect = 4e-33 Identities = 277/403 (69%), Gaps = 6/403 (1%) Strand=Plus/Minus Query 141467 GCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAACACAAT 141526 ||| || ||||| ||||| | ||||| ||||||| || ||||||||||| ||| | Sbjct 2806266 GCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAG 2806207 Query 141527 CAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAACCTTTACGAAT 141586 || | |||||||||| || |||||||| ||| |||||| || || | ||| || | Sbjct 2806206 CAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCAC 2806147 Query 141587 ACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAAGGTACTACGCC 141646 || || ||||| ||| | | ||||| | | |||||||| |||| || | ||| Sbjct 2806146 GCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATGCAGCC 2806087 Query 141647 AGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAATCATGCCTGCGTT 141706 ||||| |||| || || || || || || || || ||||| Sbjct 2806086 GGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCGGCGTT 2806027 Query 141707 AATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGCA---GAGTTTGCATCATT 141763 ||| |||||||| || |||| |||||| ||||| ||||| || ||| | || | | | Sbjct 2806026 AATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCGTTAAT 2805967 Query 141764 GATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAATTGACGAGTTGG 141823 | || ||||||||||| || | ||||| | ||| || || ||||| || || || || Sbjct 2805966 G---GAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGG 2805910 Query 141824 GGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTA 141866 ||| || || || | ||||||||| || |||| ||| || ||| Sbjct 2805909 GGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTA 2805867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524928501442440