Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq93 131 2e-25 seq212 116 5e-21 seq122 109 7e-19 >seq93 Length=974399 Score = 131 bits (144), Expect = 2e-25 Identities = 163/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 102152 ||| | ||||| ||||| | |||||| | | ||||| || |||||||| ||||||||| Sbjct 914846 TTTAATGCCATTGAAACACTCCCATGTGTGAAGAAGAAGGCCGATTGGGCCATGAAGTGG 914787 Query 102153 TTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGT 102212 ||| | |||| | |||||||||||| | | || ||||| ||| |||||| Sbjct 914786 ATTGCTCATGAGTCTGCCACGTTTGCTGAGCGAGTAATTGCCTTTGCTGCTGTGGAGGGT 914727 Query 102213 ATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCC 102271 |||||||||||||| ||| ||| || |||| ||||| |||||| |||| || ||||| Sbjct 914726 ATCTTCTTCTCTGGAAGCTT-TGCTGCCATTTTCTGGCTTAAGAAGAGAGGGCTTATGCC 914668 Query 102272 AGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 |||||| |||| ||| ||| | || || || || |||| Sbjct 914667 AGGTCTTACCTTCAGCAATGAGTTGATTTCACGAGATGAGG 914627 >seq212 Length=676889 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 176021 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 176080 || ||||| || ||||||| ||||||||||||||| ||| ||||||||| |||||| Sbjct 82505 TCTTTACCTCCAGTGAGACGTGTACCAAACTGACCATTGGGCATAAGAAGATTAATATTG 82564 Query 176081 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 176140 || ||| || || | | || || ||||||||||| || ||| ||||||||||| Sbjct 82565 TTGCTACCAATATAATTTTGAGCTAAGTTGACAATCGTTCCCATGAGTGAGACTTCACCA 82624 Query 176141 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 176200 |||||||| || | ||||| || | | || ||||| |||||||| | || | | Sbjct 82625 TGGTGGTAAGCTGAATGTTCTGCTACTGAACCAGCTAACTGAGCCACTTTTACTTCTTTC 82684 Query 176201 TTGAGATTCTTGTGGAAACATGCGTACATAACCT 176234 ||| |||| | | ||||| | || || |||| Sbjct 82685 TTGTCATTCCTTTTTAAACAAGTATAAATTACCT 82718 >seq122 Length=4874392 Score = 109 bits (120), Expect = 7e-19 Identities = 279/417 (67%), Gaps = 6/417 (1%) Strand=Plus/Plus Query 15836 CAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCG 15895 || ||||| ||| ||||| |||||| || ||| | || | || ||| |||||||| Sbjct 3848120 CAGGATCTGCTCACGTCCGCGAACATCCGGCAGACCAACGACAACCTGACGGTCAAAGCG 3848179 Query 15896 ACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAAC 15955 || || || || ||||| || || | ||| || || ||||||||||| || | Sbjct 3848180 GCCCGGACGCAGCAGCGCAGGGTCGAGTACGTCAGGACGGTTAGTTGCGGCGATAACGAT 3848239 Query 15956 AATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTC 16015 || ||| | | || || || |||||||| || | |||||| | || || || Sbjct 3848240 GATGCCTTCATTGCCTTCGAAGCCGTCCATCTCAACCAGCATCTGGTTCAACGTCTGCTC 3848299 Query 16016 CCGTTCATCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 16074 || ||||| | | | || ||| |||| ||| || || |||||||| |||| Sbjct 3848300 ACGCTCATCGTGACCACCACCTA-AACCGGCACCGCGCTGACGGCCAACGGCATCGATCT 3848358 Query 16075 CATCAATGAAGACGATGCATGGT-TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACA 16133 |||| || |||| |||||| ||| | |||| ||| ||| || | || || ||| Sbjct 3848359 CATCGATAAAGATGATGCACGGTGCGGCTTTC-TTAGCCTGTTCGAACATGTCGCGCACA 3848417 Query 16134 CGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAA 16192 || || || |||||||||||||| || || |||| | ||||| || | | ||| Sbjct 3848418 CGAGATGCACCTACACCAACAAACATTTCAACGAAGTCAGAACCGGAA-ATGGTAAAGAA 3848476 Query 16193 GGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || || | |||||| ||||| ||| || || || || ||||| ||||| || Sbjct 3848477 AGGCACTTTTGCTTCACCGGCAATCGCTTTTGCCAGCAGGGTTTTACCGGTACCCGG 3848533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620693803629360