Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq93 116 4e-21
seq122 87.8 2e-12
seq212 84.2 3e-11
>seq93
Length=974399
Score = 116 bits (128), Expect = 4e-21
Identities = 164/225 (73%), Gaps = 4/225 (2%)
Strand=Plus/Plus
Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352
|||||||||| ||||| | ||||| |||| || |||||||| || || | |||||
Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686
Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411
| | ||| |||| || ||| || || ||||||||||||||||||||| |||||
Sbjct 914687 TAAGCCAGAAAATGGCAGCA-AAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAG 914745
Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACT-TTGTGTCAAACCATTTCATTGCCCATTT 117470
|||| | ||||| || || | | ||||| || | ||| ||| ||||| ||||| |
Sbjct 914746 GCAATTACTCGCTCAGCAAACGTGGCAGACTCATGAG-CAATCCACTTCATGGCCCAATC 914804
Query 117471 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 117515
|||||||||| | |||||| | |||| ||||| | ||||||
Sbjct 914805 GGCCTTCTTCTTCACACATGGGAGTGTTTCAATGGCATTAAATAA 914849
>seq122
Length=4874392
Score = 87.8 bits (96), Expect = 2e-12
Identities = 277/420 (66%), Gaps = 12/420 (3%)
Strand=Plus/Plus
Query 9143 CAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCG 9202
|| ||||| ||| ||||| |||||| || ||| | || | || ||| ||||||||
Sbjct 3848120 CAGGATCTGCTCACGTCCGCGAACATCCGGCAGACCAACGACAACCTGACGGTCAAAGCG 3848179
Query 9203 ACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAAC 9262
|| ||||| || ||||| || || | ||| || || || |||||||| || |
Sbjct 3848180 GCCCGGACGCAGCAGCGCAGGGTCGAGTACGTCAGGACGGTTAGTTGCGGCGATAACGAT 3848239
Query 9263 AATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTG 9319
|| ||| ||||| || || || |||||||| || | ||||| | || ||
Sbjct 3848240 GATGCCT---TCATTGCCTTCGAAGCCGTCCATCTCAACCAGCATCTGGTTCAACGTCTG 3848296
Query 9320 TTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAA 9378
|| || ||||| | | | || ||| |||| ||| || || |||||||| |
Sbjct 3848297 CTCACGCTCATCGTGACCACCACCTAA-ACCGGCACCGCGCTGACGGCCAACGGCATCGA 3848355
Query 9379 TCTCATCAATGAAGACAATACATGGTT-GATTTTCGCGGGCGATTTCAAAGAGATCGCGA 9437
||||||| || |||| || || ||| | |||| | | || | || | |||||
Sbjct 3848356 TCTCATCGATAAAGATGATGCACGGTGCGGCTTTCTTAGCCTGTT-CGAACATGTCGCGC 3848414
Query 9438 ACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GAT 9496
|| | || || |||||||||||||| || || |||| | ||||| || | |
Sbjct 3848415 ACACGAGATGCACCTACACCAACAAACATTTCAACGAAGTCAGAACCGGAA-ATGGTAAA 3848473
Query 9497 GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
||| || || || | |||||| ||||| ||| || || || || ||||| ||||| ||
Sbjct 3848474 GAAAGGCACTTTTGCTTCACCGGCAATCGCTTTTGCCAGCAGGGTTTTACCGGTACCCGG 3848533
>seq212
Length=676889
Score = 84.2 bits (92), Expect = 3e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 168471 TCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTG 168530
|| ||||| || ||||||| |||||||| |||||| || |||||| ||||| |||
Sbjct 82505 TCTTTACCTCCAGTGAGACGTGTACCAAACTGACCATTGGGCATAAGAAGATTAATATTG 82564
Query 168531 TTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAG-GATACTTCACC 168589
|| ||| | || | | || || || |||||||| ||| | || || ||||||||
Sbjct 82565 TTGCTACCAATATAATTTTGAGCTAAGTTGACAATCGT-TCCCATGAGTGAGACTTCACC 82623
Query 168590 ATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATC 168649
||||||||| || || | || || || | | || | || ||||| || | ||| |
Sbjct 82624 ATGGTGGTAAGCTGAATGTTCTGCTACTGAACCAGCTAACTGAGCCACTTTTACTTCTTT 82683
Query 168650 CTTGAGATTCTTATGGAAGCAAGCATACATCAC 168682
|||| |||| | | || |||| ||| || ||
Sbjct 82684 CTTGTCATTCCTTTTTAAACAAGTATAAATTAC 82716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589934611878120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |