Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq93 116 4e-21 seq122 87.8 2e-12 seq212 84.2 3e-11 >seq93 Length=974399 Score = 116 bits (128), Expect = 4e-21 Identities = 164/225 (73%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||||||||| ||||| | ||||| |||| || |||||||| || || | ||||| Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 | | ||| |||| || ||| || || ||||||||||||||||||||| ||||| Sbjct 914687 TAAGCCAGAAAATGGCAGCA-AAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAG 914745 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACT-TTGTGTCAAACCATTTCATTGCCCATTT 117470 |||| | ||||| || || | | ||||| || | ||| ||| ||||| ||||| | Sbjct 914746 GCAATTACTCGCTCAGCAAACGTGGCAGACTCATGAG-CAATCCACTTCATGGCCCAATC 914804 Query 117471 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 117515 |||||||||| | |||||| | |||| ||||| | |||||| Sbjct 914805 GGCCTTCTTCTTCACACATGGGAGTGTTTCAATGGCATTAAATAA 914849 >seq122 Length=4874392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 277/420 (66%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 9143 CAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCG 9202 || ||||| ||| ||||| |||||| || ||| | || | || ||| |||||||| Sbjct 3848120 CAGGATCTGCTCACGTCCGCGAACATCCGGCAGACCAACGACAACCTGACGGTCAAAGCG 3848179 Query 9203 ACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAAC 9262 || ||||| || ||||| || || | ||| || || || |||||||| || | Sbjct 3848180 GCCCGGACGCAGCAGCGCAGGGTCGAGTACGTCAGGACGGTTAGTTGCGGCGATAACGAT 3848239 Query 9263 AATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTG 9319 || ||| ||||| || || || |||||||| || | ||||| | || || Sbjct 3848240 GATGCCT---TCATTGCCTTCGAAGCCGTCCATCTCAACCAGCATCTGGTTCAACGTCTG 3848296 Query 9320 TTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAA 9378 || || ||||| | | | || ||| |||| ||| || || |||||||| | Sbjct 3848297 CTCACGCTCATCGTGACCACCACCTAA-ACCGGCACCGCGCTGACGGCCAACGGCATCGA 3848355 Query 9379 TCTCATCAATGAAGACAATACATGGTT-GATTTTCGCGGGCGATTTCAAAGAGATCGCGA 9437 ||||||| || |||| || || ||| | |||| | | || | || | ||||| Sbjct 3848356 TCTCATCGATAAAGATGATGCACGGTGCGGCTTTCTTAGCCTGTT-CGAACATGTCGCGC 3848414 Query 9438 ACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GAT 9496 || | || || |||||||||||||| || || |||| | ||||| || | | Sbjct 3848415 ACACGAGATGCACCTACACCAACAAACATTTCAACGAAGTCAGAACCGGAA-ATGGTAAA 3848473 Query 9497 GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || || || | |||||| ||||| ||| || || || || ||||| ||||| || Sbjct 3848474 GAAAGGCACTTTTGCTTCACCGGCAATCGCTTTTGCCAGCAGGGTTTTACCGGTACCCGG 3848533 >seq212 Length=676889 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 168471 TCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTG 168530 || ||||| || ||||||| |||||||| |||||| || |||||| ||||| ||| Sbjct 82505 TCTTTACCTCCAGTGAGACGTGTACCAAACTGACCATTGGGCATAAGAAGATTAATATTG 82564 Query 168531 TTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAG-GATACTTCACC 168589 || ||| | || | | || || || |||||||| ||| | || || |||||||| Sbjct 82565 TTGCTACCAATATAATTTTGAGCTAAGTTGACAATCGT-TCCCATGAGTGAGACTTCACC 82623 Query 168590 ATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATC 168649 ||||||||| || || | || || || | | || | || ||||| || | ||| | Sbjct 82624 ATGGTGGTAAGCTGAATGTTCTGCTACTGAACCAGCTAACTGAGCCACTTTTACTTCTTT 82683 Query 168650 CTTGAGATTCTTATGGAAGCAAGCATACATCAC 168682 |||| |||| | | || |||| ||| || || Sbjct 82684 CTTGTCATTCCTTTTTAAACAAGTATAAATTAC 82716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589934611878120