Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_014792.1 Length=169285 Score E Sequences producing significant alignments: (Bits) Value seq83 120 3e-22 seq122 116 4e-21 >seq83 Length=912621 Score = 120 bits (132), Expect = 3e-22 Identities = 305/462 (66%), Gaps = 4/462 (1%) Strand=Plus/Minus Query 141334 CCAGTCGTTCCATCATCAGGTTATTCAACTGAACACCATAGTCCATATGTCTGATGCGGT 141393 |||| |||| ||| || || || | || || || || || | || | || |||| Sbjct 580202 CCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGT 580143 Query 141394 TTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATA 141453 | ||||||| || ||| || ||||| || | ||| |||||| |||||| ||||| | Sbjct 580142 TACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACA 580083 Query 141454 AAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAG 141513 ||| ||| | || || || || || || | || ||||| || || ||||| || | Sbjct 580082 TAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGG 580023 Query 141514 CCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGCTTGACTTCACCCATACCGA 141573 |||| ||||| ||||| ||||||| ||| ||| ||||| ||||||| || || Sbjct 580022 CCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGA 579963 Query 141574 TTTTCGAACCTTCAGCACGAATCATGCCAACGTTGATACCGATACCCGCCCGCTTACTGA 141633 || ||| |||||||| |||| | ||||||||||| || | ||| | ||| Sbjct 579962 TTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTG--CGCGTTGTGA 579905 Query 141634 TA--TATTCGATGATTGAATTGGCGGTCTTATTGATTGACTTCAGGGAGTCAGCAGCTTC 141691 | |||| | ||| | | | | || ||||| || | | | || || || Sbjct 579904 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTC 579845 Query 141692 GATAACCACACAGGAACTGAACTGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGT 141751 ||||| ||| || || ||||| || || || || || | | || |||||||| || || Sbjct 579844 GATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGT 579785 Query 141752 GGGCAACGAAACCTGTCTTGTGGATACTGCATCATAAAAACG 141793 || || |||| | || || || ||||||||||| || Sbjct 579784 AGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCG 579743 >seq122 Length=4874392 Score = 116 bits (128), Expect = 4e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 141303 GGACTAAACAGAGTGATGTAATCATTCTTAGCCAGTCGTTCCATCATCAGGTTATTCAAC 141362 || || |||||||| || | ||| ||| ||| || | |||||| || |||| | Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 141363 TGAACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTCTTCAGA 141422 || || || ||||||||||| | | |||||| |||||||||| |||||||||||| Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 141423 ACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCAGCGCCGCCA 141482 || || | |||| ||||||| |||||| | || || | || || || ||||| Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 141483 CGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAAT 141541 || | || || || || ||||| || || || || ||||| || || |||||||||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT 2806093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 52232 CATGGTTGCTTTCCGGCCGCAATGGCAGACGCCCTTTAATTCAACCAGTTTATCCGAAAT 52291 |||| | ||||| | |||||| ||||||| | |||||||||||||||||||| || Sbjct 1707341 CATGCTGGCTTTTCTGCCGCAGTGGCAGATGGTTTTTAATTCAACCAGTTTATCTGACCA 1707282 Query 52292 AGCCAGAAG--TCTGGCTGAACCGGGAAATAACTGACCCCGAAAATCTGTTCTTAACCCG 52349 || | ||| ||||| |||| |||||||| || ||||||||||| | ||| || Sbjct 1707281 GGCTAAAAGGTATTGGCT--ACCGATAAATAACTCGCCGCGAAAATCTGTACGTAAGCCA 1707224 Query 52350 TAACACATAACGGGGATATTGTAATTATCAACCACT 52385 ||||| | || || |||| || ||| |||||| Sbjct 1707223 TAACAAAGTACAGGTATATCTAAAACATCCACCACT 1707188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541541600742600