Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015250.1 Length=159801 Score E Sequences producing significant alignments: (Bits) Value seq83 84.2 2e-11 >seq83 Length=912621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 277/425 (65%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 137175 ACGTTCAATCATTAAATTGTTCAACTGAATACCATAGTCCATATGACGGATACGGTTTTC 137234 ||||| | ||| | ||||| | || | || || || | ||||||| |||||| | Sbjct 580198 ACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACC 580139 Query 137235 TTCAATGCCTTTGTTGTTCTTGAGAACAATCAGGTTTTCACATTCTAAGTGCCAGCCAGG 137294 ||||| || ||| || || || || | | | ||||| ||| |||||||| ||| Sbjct 580138 TTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGG 580079 Query 137295 CCAGTAACA-TGTAGCTGAGCCTTTACGAATACCACCTTGAGAGCATGAATGTACTCCAG 137353 | |||| ||| || | || || | || ||||| ||||| || | || | | Sbjct 580078 GTAA-AACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCG 580020 Query 137354 TATTAAAATGCTTCCAGAACGGGGTCACGCCAGTATGCTTAACTTCACCAGGCCCAATCT 137413 | | || || || |||||||| | || ||||| | |||||||| ||| Sbjct 580019 TCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCA---CCACGGA 579963 Query 137414 TTGAACCTTCT---GCACGGATTGCTCCACC--TGAAACCCCAATGCCCGCTCGTTTTGA 137468 ||| | || ||||| || ||| | ||| ||| || || || |||| ||| Sbjct 579962 TTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCG--ATCCCTGCGCGTTGTGA 579905 Query 137469 CACGTACGAAATAATAGCAGATGATGTTTCATTAATCGAGTCCAAGCTATCACCAGATTC 137528 ||||| || |||||| || || | || || ||||| |||||||| ||| | || Sbjct 579904 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTC 579845 Query 137529 AATCAGTACACAAGAACTAAATTGACGTGTTGGTGTACGTACTCCGGCCATGATTGGAGT 137588 || || || || || || ||||| || || || || ||||| || ||||||||||| || Sbjct 579844 GATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGT 579785 Query 137589 GGGTA 137593 |||| Sbjct 579784 AGGTA 579780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511195176674280