Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq122 417 2e-112 >seq122 Length=4874392 Score = 417 bits (462), Expect = 2e-112 Identities = 747/1079 (69%), Gaps = 20/1079 (2%) Strand=Plus/Minus Query 15729 GCGAACTTGACCAGATAGCGGTCGGTGATGCGCTGGCGGAACGTCAGGTCTTCGAGCGGC 15788 ||||| || |||| |||| |||||| |||||||| || | ||||| ||||| |||||| Sbjct 200928 GCGAAGTTCGCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGC 200869 Query 15789 GGGGCAGGGCAGAAGTCGTAATCGATGAAGCCCTGGCCGGCCTTGAGCGAATCCTTGTCG 15848 || | ||| ||||||| ||||| | || |||||| || || |||| | | Sbjct 200868 GGCACCGGGGTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCAGGCTCTCCTGGCTG 200809 Query 15849 TTCGCGCCCGGATCGAACCAGCATTCGCCGTCGATCAGGTAGCCGGCGGTCTTCCACGCG 15908 || |||| ||| ||||||| | | || | | ||| || |||||| | || | | Sbjct 200808 TTGGCGCTTTCGTCGTACCAGCAGTTGGCGCCCAGCAGATAACCGGCGTTGATCAGCTCA 200749 Query 15909 CGGAACTTCGCATTCACGCCATCGACGATGTCGCGCATCAGCGTGCGGC-TCATCGGCTG 15967 |||||||| || || | || ||| |||||||||| |||||| |||| ||| ||||| Sbjct 200748 CGGAACTTGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGT-CGGCGTCAGCGGCTT 200690 Query 15968 GTCGACGGCCCACATGTGCGCCTCGGCCATCGTGTCGGCGATCACCTGCGCACTGCGCAC 16027 |||| ||||||||| ||||| |||||||| |||||||||||||||||||| ||| Sbjct 200689 GTCGTTGGCCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGT 200630 Query 16028 ATAGTTCTCGAACGCCCACAGCTTGTCCTCGGAACAGGTGCGCGATCCCCATAGACGGTA 16087 ||||| || || || ||||| ||| ||| ||||||||| ||||| | ||| | Sbjct 200629 GTAGTTTTCAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCGGAA 200570 Query 16088 ACCGTCCGCGTTCACCAGCGTGGTCACTTCGTGGCT--GTTCAGGTAGCCCGCGTCGGTG 16145 |||||| | | ||||||||| || ||||| ||||| | || ||||| Sbjct 200569 ACCGTCTTTGCGGATCAGCGTGGTGAC--GCTGGCTTCATTCAGCAGATCGGCATCGGTC 200512 Query 16146 TTCGGGTCCTGCAGGTCCCAGAACACGTCGCGGCTG--ATGCCCGTGACGCCGTTGACCA 16203 | | ||||||||||||||| || || ||| | | ||| || ||||||||||| Sbjct 200511 CCCACCTGCTGCAGGTCCCAGAATAC--CGAGGCGGAAACGCCGGTCACGCCGTTGACGC 200454 Query 16204 CGACGTTCGAGATCGTCTTGTGCCAGCCGATCTCTTCGTCGATCTTCGCGCGCATGCCGA 16263 |||||||||| | || || ||||||||| | || | ||||| || ||||||| ||||| Sbjct 200453 CGACGTTCGACAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAGGCCGA 200394 Query 16264 GCGCGCGCGCCGTTGCCCACGTGATGTCCTCGGCGTTGGTCGTGGTGTTCCAGTTCACGA 16323 | ||||| || || || | | | ||| | ||| ||||| |||||||||| || | Sbjct 200393 GGGCGCGGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAA 200334 Query 16324 AATCCGGCCAGATCGTCATCAGCTCACGCTGGCCGAAGTTCGCGCGGTAGGTGGTCGCTT 16383 | || ||||||||| ||||||||| ||||||| |||||| |||| || || ||| | Sbjct 200333 AGTCGGGCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCAT 200274 Query 16384 CCTCCTT--CGTCTGTGCGCCGAACGCGCTGATGTAGCCGAAGCCGCGCAGCTTCTGCGC 16441 | ||| ||| | |||| | || ||| ||||||||| ||||||||| ||| Sbjct 200273 C--GCTTACCGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTGGCA 200216 Query 16442 GATCGTCGCAAGCTCGGACGCGACGGGCAGGGTGTCGAGGCCTGGACAACCGAGCACGCG 16501 ||| | ||| ||| ||| || || ||| | || || || || ||||| | || Sbjct 200215 GATTGCCGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACG 200156 Query 16502 CGGCTTCACGCCGAGGCGGCTCTTCGCGGCGAGCAGCGCCTTCATACCGGTGTACTGACC 16561 |||||| ||||| ||| | ||| ||| ||||||||||| ||||| |||||||| | || Sbjct 200155 CGGCTTAACGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGTAGCGGCC 200096 Query 16562 GTCCGCGGTGGTCGTGCCGATCACGTTGCTGGTCGTGGTATCCGGATC--CTTGCCGGTC 16619 || || | | |||||| | |||||| ||||| ||| || ||| | || Sbjct 200095 GTTAGCATCGCTGCCGCCGATGATATTGCTG---GTGGTTGCCGCTTCGTCTTCACCCTC 200039 Query 16620 GGC-ACACGCACCGCGACGATCAGCGGGGACGTCTGCGCGGCGATCGCATCGAGCGAACG 16678 | || |||||| | || | | ||| |||| |||| ||||| | |||| Sbjct 200038 CTCAACGCGCACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTT 199979 Query 16679 CGCGAGCGTGCCCTTCGTGCCTGCCTTGCCGATCGCTGCCTGCACGTCGGTGATGAGAAC 16738 ||| |||||||| | || || || || | ||| |||||||||||||| || || || Sbjct 199978 CGCCAGCGTGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCAC 199919 Query 16739 GGGACGGTTTTCGGGGAAGGTGGCCGCATCGGCGTCGTCGGCCGTGCTGACCAGGCCGA 16797 || ||| ||||| || ||||| || || | || |||| ||||| ||||| Sbjct 199918 CGGCGTGTTGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGA 199860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119024747099188