Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq122 367 3e-97 >seq122 Length=4874392 Score = 367 bits (406), Expect = 3e-97 Identities = 887/1326 (67%), Gaps = 29/1326 (2%) Strand=Plus/Minus Query 13953 GCCGCTCATGCCGCCGCCCTGGTAGTCCTCCATCTTTCGCGACAGCTTCGGGAGCTGGAT 14012 |||| ||||||||||||| |||| || | ||| |||| ||||||||| ||| | Sbjct 201094 GCCGTTCATGCCGCCGCCGCGGTAAGGGTCGAGCTTGCGCGCCAGCTTCGGCAGCGTCAG 201035 Query 14013 TTCCTTCGTCTCGCCGACAAAGTTGGTGCCGTTGTGAAACAGGTTGAAGCCTTTCAGCTT 14072 | || | | || | || || || | | || ||||| || | | |||||| || Sbjct 201034 TGAGGTCACCACACCCTGATAGCTGTTGGCATCGTTAAACAAATTCAGGTATTTCAGTTT 200975 Query 14073 GCGGGGCATACCCATGTGTGTGACTCCTGGTTAGGCCGACACGCGCGAGGCGAAATCGGC 14132 |||| ||||| | || ||||| ||| ||| | |||||| | || Sbjct 200974 CTTAGGCAGTGCCATGAGGGTTTCTCCT---TAGCTGTTCACAGAAGCGGCGAAGTTCGC 200918 Query 14133 GAGATAGCGATCGGTGATGCGCTGGCGCAGCTTCAGGTTTTCGAGCGGCGGGACCGGCGT 14192 || |||| ||||| |||||||| ||||| |||| | ||| |||||||| ||||| || Sbjct 200917 CAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGCGGCACCGGGGT 200858 Query 14193 GTAGTCGTAGTCGATCCATGTACC--GCCCGACGTCAG-CTCGTCGGTCGTGTTCG-GCT 14248 |||||||||||||| || | | ||| | |||| ||| | | | |||| | ||| Sbjct 200857 ATAGTCGTAGTCGAT--ATACAGCTTGCCGGCTTTCAGGCTCTCCTGGC-TGTTGGCGCT 200801 Query 14249 CCGGGTCGTACCAGGCGCCGCCACCGATCAGCTCGCCGACCGAGACTTCGCGG-CGGAAC 14307 | ||||||||| | | | || | ||| | ||| | || | || |||||| Sbjct 200800 TTCG-TCGTACCAGCAGTTGGCGCCCAGCAGATAACCGGCGTTGA-TCAGCTCACGGAAC 200743 Query 14308 CACGCGTTGATGTTCTCGATGATGTcgcgcgcgcgcgACGGGTTGAGCGGGCCGTCGACG 14367 |||||||| |||| ||||||||| | ||| ||| | ||||| |||| | Sbjct 200742 TTGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCGGCGTCAGCGGCTTGTCGTTG 200683 Query 14368 ACGCCCATCTGTTCCTCGGCGATCGTGTCAGCGATCACCTGTGCCGAACGCGTGTAGTTC 14427 | | ||| || | ||||| || ||||| ||||||||||| ||||| || |||||||| Sbjct 200682 GCCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGTGTAGTTT 200623 Query 14428 TCGAAGAAGAACTTGCCGTCCGCGTCGCACGTGCGCGAGCCCCAGAAACGGAAGCCGTTT 14487 || ||| |||| ||| || || ||||| ||||||||| ||||| |||| | Sbjct 200622 TCAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCGGAAACCGTCT 200563 Query 14488 CGGTTGACGAGCGTGGTGAC-CTGGTTCTCGTTCAGATAGCCGGCGTCCGTTGCCGGGTC 14546 | || ||||||||||| |||| | || ||||| |||| || || || | Sbjct 200562 TTGCGGATCAGCGTGGTGACGCTGGCT-TCATTCAGCAGATCGGCATCGGTCCCCACCTG 200504 Query 14547 TTGCAAATCCCACGACACGTCCGCGCTGATGCCGGTCACGCCGTTGACGACGACGTTCGA 14606 |||| ||||| | || ||| | ||||||||||||||||||| |||||||||| Sbjct 200503 CTGCAGGTCCCAGAATACCGAGGCGGAAACGCCGGTCACGCCGTTGACGCCGACGTTCGA 200444 Query 14607 CAGCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAGGCCCGCCGCGATCGC 14666 ||| || || ||||||||| ||||||| ||||| || |||||||| |||| | ||| Sbjct 200443 CAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAG----GCCGAGGGCGC 200388 Query 14667 CGGCGCCGGGAT-GGC---GACGGTCGAGTTCGTTATGTCGTCCCAGCCGAGCCAATCCG 14722 |||| || || ||| | | || | | || | | || |||| ||| | || | Sbjct 200387 GGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCGG 200328 Query 14723 GCCAGATCACCATGATTTCGCGCTGGCCGAACTGCTTGCGGTACGCGACCGC--CTCTTC 14780 ||||||||||||| | |||||||||| ||| | | ||| ||| || ||| | ||| Sbjct 200327 GCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCATCGCTTA 200268 Query 14781 CTTCGTCTTGCAGCCGTGCGCGGCGACGTACACCATCGCGCGCAGCGATTGCGCGATCGT 14840 | ||| || ||||||| || | || || | | ||||||||| || ||| | Sbjct 200267 C--CGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTGGCAGATTGC 200210 Query 14841 CGCGAATGCTGCGGCGACGGGCTGCGTGTCGAGGCCGGGCGCGACCAGGATGCGCGGCTT 14900 ||| | || | ||| || | ||| || || || ||| || | || || |||||||| Sbjct 200209 CGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCTT 200150 Query 14901 CACGGCGAGCTTCCCCTGCGCGGCCAGCAACGCCTTCATGCCGGTGTATTTGCCGTCCGG 14960 ||| | || | |||||| || |||| ||| ||||| |||||||| ||||| | Sbjct 200149 AACGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGTAGCGGCCGTTAGC 200090 Query 14961 CGTGACGGTGCCGATGACGTTCGCGGTCGTCTCGGCTTCGTCCTTTCCTTCCGCGACGCG 15020 | | |||||||| || ||| || | |||||||| | || ||| | ||||| Sbjct 200089 ATCGCTGCCGCCGATGATATTGCTGGTGGTTGCCGCTTCGTCTTCACCCTCCTCAACGCG 200030 Query 15021 CACGACGACGGTGACGGGCTTCGTCTGCTTGCCGATCGCGTCGAGCG-TGCGGCGCAGCG 15079 ||| || || || || ||||| |||| | | | ||||| | |||| | || ||||| Sbjct 200029 CACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTTCGC-CAGCG 199971 Query 15080 TGCCCTTCGTGCCGGCCTTGCCAAGCGCCGCGATGACGTTCGTCAGCAGCACCGGCGTGT 15139 |||| | ||||| || || | |||||| |||| || | |||||||||||||| Sbjct 199970 TGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCACCGGCGTGT 199911 Query 15140 CGAGCGGGAACGTCGCCGGGTCGGCGNNNNNNNNNNTGCAGACGATGCCGAGCACGGCCG 15199 ||||||||| | | || || ||||||| ||||||| | | | Sbjct 199910 TGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGACAATAGAAG 199851 Query 15200 TGGAGACCGTGCGAATCGGCCGGCCGCCTTCGTTGATTTCGATGACGCGTACGCCGTGGT 15259 |||| |||||| ||| ||| || || |||||||| | ||||||||||||||||| Sbjct 199850 TGGATACCGTGGAAATACTGCGGGTTCCGTCATTGATTTCAACGACGCGTACGCCGTGGT 199791 Query 15260 GGTAAT 15265 | |||| Sbjct 199790 GATAAT 199785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129644757197102