Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq122 410 2e-110 >seq122 Length=4874392 Score = 410 bits (454), Expect = 2e-110 Identities = 895/1338 (67%), Gaps = 27/1338 (2%) Strand=Plus/Minus Query 11998 GCCATTCGTGCCGCCGCCGCGCCATGCTTCCATCTTGCGCGAGAGCTTCGGCAGCCCGAC 12057 ||| ||| ||||||||||||| | | || | |||||||| |||||||||||| | Sbjct 201094 GCCGTTCATGCCGCCGCCGCGGTAAGGGTCGAGCTTGCGCGCCAGCTTCGGCAGCGTCAG 201035 Query 12058 TTCTGCAATCTGTCCGGCGAAGTTTTCGCCGTTCTGGAACAGATTGAAGTTCTTCAGTTT 12117 | | | | || || | | | | | | |||| ||| | || |||||||| Sbjct 201034 TGAGGTCACCACACCCTGATAGCTGTTGGCATCGTTAAACAAATTCAGGTATTTCAGTTT 200975 Query 12118 CTTCGGCAATGCCATGTTCATTTACTCCCTAGTTATGCCGTGACGCGCGCGGCGAAATCG 12177 ||| |||| ||||||| ||| |||| ||| | | | || ||| ||||| | Sbjct 200974 CTTAGGCAGTGCCATGAGGGTTT-CTCCTTAGCTGTTCACAGAAGCG----GCGAAGTTC 200920 Query 12178 GCGAGGTAACGGTCGGTGATGCGTTGGCGCAGCATCAGGTTTTCGATCGGCGGAACGGGC 12237 || ||||| | |||||| ||||| || ||||| |||| | ||| | |||||| || || Sbjct 200919 GCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGCGGCACCGGG 200860 Query 12238 GTGTAGTCGTAATCGATCGCCAGCTTGCCGGCCTTGAGCGATTCGACGGGGTTCGCGCTG 12297 || |||||||| ||||| |||||||||||| || || || | ||| ||||| Sbjct 200859 GTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCAGGCTCTCCTGGCTGTTGGCGCTT 200800 Query 12298 TCGTCGTACCAAGCCG-AGCCGCCGAGCAGATAGCCGTTTGCGATCAGCTCGCGGAATTT 12356 |||||||||| ||| | | |||| |||||||| ||| ||||||||| ||||| || Sbjct 200799 TCGTCGTACC-AGCAGTTGGCGCCCAGCAGATAACCGGCGTTGATCAGCTCACGGAACTT 200741 Query 12357 CGCGTTGATGCTTTCGATCATGTCTTTCACGATCGACGGGTGCATCGGCTTGTCGACATA 12416 |||||||| | |||| ||||| ||| | || ||| || |||||||||| Sbjct 200740 GGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCGGCGTCAGCGGCTTGTCGTTGGC 200681 Query 12417 AACCATGTGTGCTTCCGCCATCGTGTCGGCGAGCACTTGCGCGGTGCGCGTGTAGTTCTC 12476 ||| || || || ||||| |||||||||| ||| ||||| | ||| |||||||| || Sbjct 200680 CCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGTGTAGTTTTC 200621 Query 12477 GAATGCGAACAGCGGATCATCCGAGCAGGTGCGCGAACCCCAGAAGCGATAGCCCGTC-G 12535 || ||||||||||| ||||| |||||||| ||||||||||| | ||||| Sbjct 200620 AAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCG-GAAACCGTCTT 200562 Query 12536 AGTTGATGAGCGTCGTCACATCGTTCTCGTTGAGGTAGCCGGCATCGGTCGCGGGGTCTT 12595 | ||| ||||| || || | || || || ||||||||||| | | | Sbjct 200561 TGCGGATCAGCGTGGTGACGCTGGCTTCATTCAGCAGATCGGCATCGGTCCCCACCTGCT 200502 Query 12596 GCAAGTCCCAGAAAACATCCTTGCTGATA--CCCGTAACGCCATTGATGCCGACATTCGA 12653 ||| ||||||||| || | || || | || || ||||| |||| |||||| ||||| Sbjct 200501 GCAGGTCCCAGAATAC--CGAGGCGGAAACGCCGGTCACGCCGTTGACGCCGACGTTCGA 200444 Query 12654 AATCGTCTTGTGCCAGCCCGTTTCCTCGTCGATCTTGGCGCGCAAGCCGAGCGCGATCGC 12713 | || || |||||||| | || | ||||| |||||||||| |||||| ||| || Sbjct 200443 CAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAGGCCGAGGGCGCGGGC 200384 Query 12714 GGTCGCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCCATCCGAGGAAATCCGGCCA 12773 ||| || | ||| ||| ||| || || ||||| Sbjct 200383 GGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCGGGCCA 200324 Query 12774 CATCACCATCAGCTCGCGTTGGCTGAATTGCTGGCGATAGGCCATCGC--CGCTTCCTTG 12831 ||||||||||||||||| |||||||| | | |||||| | ||| ||||| | Sbjct 200323 GATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCATCGCTTACCGT 200264 Query 12832 TTCGCCGCGCCGTTCGCCGACACATAGCCGAACCCGCGCAGCTTTTGTGCGAGCGTGCCG 12891 || | ||||| ||||| | ||||||||| ||||||||| || || || ||||| Sbjct 200263 TTTAC--AGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTG-GC-AGATTGCCG 200208 Query 12892 --AGGGCCGCCGCGACAGGCTGCGTATCGAGGCCGGGAGCGCCGAGAATGCGCGGCTTGA 12949 || || | || || | ||| ||| || || || |||||||||| |||||||| | Sbjct 200207 CCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCTTAA 200148 Query 12950 TGCCGAGTTTCGATTGCGCCGAGAGTAGCGCTTGCATGCCCGTATAAGCGCCCGTCACGG 13009 ||| || | | ||||||| ||| ||||||| ||| || || | |||| |||| | | Sbjct 200147 CGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGT-AGCGGCCGTTA--G 200091 Query 13010 CGTCGGGTTTGCCGATCACGTTGCTCGNNNNNNNNNNNNNNNNNNNNCCTTCAGCGACGC 13069 | ||| |||||| | ||||| | || || | |||| Sbjct 200090 CATCGCTGCCGCCGATGATATTGCTGGTGGTTGCCGCTTCGTCTTCACCCTCCTCAACGC 200031 Query 13070 GCACGACGACAGTGACGGGCTTCGCCTGTGCGGCCATCGCTTGAAGCGTGCGCGCGAGCG 13129 |||| || || || || ||||| ||| |||| ||||| || |||| ||| |||| Sbjct 200030 GCACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTTCGCCAGCG 199971 Query 13130 TGCCCTTGTCGCCGGCCTTGCCGATCGCCGATTGAATGTTCGTCAGCAGCACGGGCGTAT 13189 |||| || | ||||| || || | ||||| || | || || | |||||| ||||| | Sbjct 199970 TGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCACCGGCGTGT 199911 Query 13190 CGAGCGGGAACATCGAGGCGTCAGCATCGAGGGCGGTCGCGACGAGGCCGACAACGGCCG 13249 ||||||||| | | ||| |||||||| || || ||| | |||||||| | | Sbjct 199910 TGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGACAATAGAAG 199851 Query 13250 TTGATACGGTGCGAATCGGGCGCGTGCCTTCGTTAATTTCGAGTACGCGCACGCCGTGAT 13309 | ||||| ||| ||| ||| || || || || ||||| | ||||| |||||||| | Sbjct 199850 TGGATACCGTGGAAATACTGCGGGTTCCGTCATTGATTTCAACGACGCGTACGCCGTGGT 199791 Query 13310 GGTAGTCAGTAGGCATCT 13327 | || | ||| ||||| Sbjct 199790 GATA---ATTAGCCATCT 199776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103285117791674