Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq298 96.9 4e-15 seq664 86.0 7e-12 >seq298 Length=309835 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 159632 AGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACT 159691 |||| ||||| |||||||||||| | ||||| || ||||| || || |||| | Sbjct 32849 AGGTTTATCTGGATGGTGCAAATATGAATGCTCAAGTAGGCCTTTGTCGTCCTGGTGATT 32908 Query 159692 ATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTG 159751 | || | ||||| | ||||| ||||| || ||||||||||| ||||| ||||| || | Sbjct 32909 ACGGATCTGATGTGTCACATCTGAACTTGCACAAGACATTCTGCATTCCCCATGGTGGAG 32968 Query 159752 GAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 | |||||||| | || ||||| || || Sbjct 32969 GTGGTCCTGGTATGGGACCTATAGGAGT 32996 >seq664 Length=66043 Score = 86.0 bits (94), Expect = 7e-12 Identities = 264/407 (65%), Gaps = 6/407 (1%) Strand=Plus/Minus Query 159400 ATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTT 159459 || |||| || || ||||| ||||| ||||| || || ||||| || ||| | || Sbjct 15795 ATTCCAGCCTCCGCCCATGGCACTAACCCTGCCTCCGCCCAAATGGCCGGTATGGACGTG 15736 Query 159460 GTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCA 159519 |||| || |||||| | | || || || || || |||| || | || ||| Sbjct 15735 GTAGTGGTTGCCTGTGATAAACAAGGTAATATCGATCTCGAAGACCTCCGTACCAAGGCA 15676 Query 159520 ATCATGAATACATTTGAAC---TGTCATGTATTATGATTACATATCCATCTACACATGGT 159576 | | | || ||| | | || || || ||| | || ||||| ||||| ||||| Sbjct 15675 AGCC---AAGCAGGTGATCATCTCTCCTGCATCATGGTGACCTATCCCTCTACTCATGGG 15619 Query 159577 GTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTA 159636 || | || | ||| | | | || | ||||| ||| || | ||||| || || Sbjct 15618 GTTTACGAGCAGACCATTCGTGAAGTCTGCGAAATTGTCCATCAGCACGGTGGGCAAGTC 15559 Query 159637 TATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGT 159696 || || ||||| || || | |||||||| || || | | | |||| | | |||| Sbjct 15558 TACCTGGATGGCGCCAACATGAATGCACAAGTGGGGATCACCACACCAGGCCATATTGGT 15499 Query 159697 GCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGT 159756 || ||||| | || || || | ||||| |||||||||||||| || || ||||| || Sbjct 15498 GCCGATGTCTCCCACCTTAATCTGCATAAAACATTCTGTATTCCCCACGGCGGTGGTGGG 15439 Query 159757 CCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTTGT 159803 || || | || || || || || | |||||| | || ||||| Sbjct 15438 CCAGGAATGGGACCGATAGGGGTTAAAGCCCATCTCGCGCCGTTTGT 15392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588005162941680