Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq122 91.5 2e-13 seq83 91.5 2e-13 >seq122 Length=4874392 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 22475 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAG 22534 |||| |||||||||||||||||||| || |||| || | ||| ||| | ||||||| Sbjct 980119 TGGGTGATTAGCTCAGTTGGTAGAGCATCTCCTTTACACGGAGGGGGTCGGCGGTTCGAG 980178 Query 22535 TCTCCTATTCTCCACTCAATCC--TCTTTAGCTCAGC-GGTAGAGCGGTTGACTGTTAAT 22591 | || |||| ||| || ||||||||| |||||||| ||||||| ||||| Sbjct 980179 CCCGTCATCACCCACCATATCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAAT 980238 Query 22592 CAATTGGTCCCTGGTTCGA 22610 ||||||||| | ||||||| Sbjct 980239 CAATTGGTCGCAGGTTCGA 980257 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 22475 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAG 22534 |||| |||||||||||||||||||| || |||| || | ||| ||| | ||||||| Sbjct 980428 TGGGTGATTAGCTCAGTTGGTAGAGCATCTCCTTTACACGGAGGGGGTCGGCGGTTCGAG 980487 Query 22535 TCTCCTATTCTCCACTCAATCC--TCTTTAGCTCAGC-GGTAGAGCGGTTGACTGTTAAT 22591 | || |||| ||| || ||||||||| |||||||| ||||||| ||||| Sbjct 980488 CCCGTCATCACCCACCATATCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAAT 980547 Query 22592 CAATTGGTCCCTGGTTCGA 22610 ||||||||| | ||||||| Sbjct 980548 CAATTGGTCGCAGGTTCGA 980566 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 22475 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAG 22534 |||| |||||||||||||||||||| || |||| || | ||| ||| | ||||||| Sbjct 3034581 TGGGTGATTAGCTCAGTTGGTAGAGCATCTCCTTTACACGGAGGGGGTCGGCGGTTCGAG 3034640 Query 22535 TCTCCTATTCTCCACTCAATCC--TCTTTAGCTCAGC-GGTAGAGCGGTTGACTGTTAAT 22591 | || |||| ||| || ||||||||| |||||||| ||||||| ||||| Sbjct 3034641 CCCGTCATCACCCACCATATCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAAT 3034700 Query 22592 CAATTGGTCCCTGGTTCGA 22610 ||||||||| | ||||||| Sbjct 3034701 CAATTGGTCGCAGGTTCGA 3034719 >seq83 Length=912621 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/140 (76%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 22475 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAG 22534 |||| |||||||||||||||||||| || | || |||| ||| ||| | |||||| Sbjct 700825 TGGGTGATTAGCTCAGTTGGTAGAGCATCTCCCTTACAAGGAGGGGGTCGGCGGTTCGAA 700884 Query 22535 TCTCCTATTCTCCACTCAATCC---TCTTTAGCTCAGC-GGTAGAGCGGTTGACTGTTAA 22590 || || |||| || | | || ||||||||| |||||||| ||||||| |||| Sbjct 700885 TCCGTCATCACCCAC-CACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAA 700943 Query 22591 TCAATTGGTCCCTGGTTCGA 22610 |||||||||| | ||||||| Sbjct 700944 TCAATTGGTCGCAGGTTCGA 700963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560564111401200