Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq83 102 1e-16 >seq83 Length=912621 Score = 102 bits (112), Expect = 1e-16 Identities = 203/294 (69%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 154147 CTAGAAGGCATCCGTTTCTACGTATCGTTTGCTTGTTCGTTCGCTTTCGGTGAAAACAAA 154206 || |||| ||| ||||||||||| ||||||||||| ||||| |||| || | Sbjct 582194 CTCGAAGCCATTCGTTTCTACGTGAGCTTTGCTTGTTCATTCGCGTTCGCCGAGCGTGAG 582253 Query 154207 CTGATGGAAGGCAATGCTAAGATCATTTCTCTCATTGCGAGAGATGAATCGCAGCACATG 154266 ||||||||||| ||||| |||||||| ||| || || | || ||| | | |||| || Sbjct 582254 CTGATGGAAGGTAATGCCAAGATCATCCGTCTTATCGCACGGGACGAAGCCCTGCACCTG 582313 Query 154267 ACCATCACTCAGAACATTCTAAA-CAAGTG-GAAGCAG-GGCGATGACCCTGACATGGTT 154323 || || ||| | || ||||| | || ||||| | | ||||| || || ||| Sbjct 582314 ACGGGAACACAGCATATGCTAAATCTGCTGCGAAGCGGTGAAGATGATCCGGAAATGAAA 582373 Query 154324 GAGATTGCACAAGAAGAAGAG-AAGAACGTCTACGAGATGTTCAATAAATGTGTTGAAGA 154382 |||||||| || ||| |||| | || ||| | ||||| || || ||| | Sbjct 582374 GAGATTGCTGCTGAGTGCGAGCAAGAGTG-CTTTGAGCTATTCAAAAAGGCTGCTGAGCA 582432 Query 154383 AGAAGTAATTTGGGCAGACTACTTGTTCCGTGATGGTTCAATGATTGGTCTGAA 154436 ||| | |||||||| ||| ||||||||||||| || ||||| || |||| Sbjct 582433 GGAAAAAGAGTGGGCAGAATACCTGTTCCGTGATGGCTCGATGATCGGAATGAA 582486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611648111849400