Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq83 84.2 2e-11 >seq83 Length=912621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 241/368 (65%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 156423 TACGTTAGTCAAAGGGCAGGAATCGGTATCAACGCAGGCAGAATCCGTGGCATCAACAGT 156482 |||||| ||| | ||||| ||||||||||| || ||| | || |||| | ||| Sbjct 579899 TACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGC 579958 Query 156483 AAGATCCGAGGTGGAGAAGTTCAACACACAGGTGTTGTCCCTTTCCTCAAAAAGTTTGAA 156542 ||||| ||||| |||| | || || ||| | |||| ||| |||| | || | Sbjct 579959 CCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACACTTCCAG 580018 Query 156543 AGCACTGTCAGATGCTGCACTCAAAATGGCATCCGAGGTGGATCAGCGACTGTCCACTTC 156602 | | || | || ||| | ||| ||| | || || || | ||||| | | | Sbjct 580019 ACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTAC 580078 Query 156603 CCAATCTGGCACGCAGAAATAGAGGACATTTTAGTCCTTAAGAATAATAAAGGAACTGAA 156662 || || |||||| ||||| || | | |||||||| || ||||| || |||| Sbjct 580079 CCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAA 580138 Query 156663 GATAATCGTGTCCGTAAACTAGACTACAGTATTCAAATTTCTAAACTGTTCTATGAACGA 156722 | ||| ||||||||| | ||||| ||| | | ||||| ||||| | ||| |||| Sbjct 580139 GGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTATCAACG- 580197 Query 156723 TTCATCGCAAA---CAGTGTCATCTCCCTCTTCAGCCCTCACGATGTGCCAGGTCTGTAT 156779 || | | ||| | | | ||||| || ||||| || ||||||||||| || || Sbjct 580198 -TC-TGGTAAAAGGCGGCGATATCTCGCTATTCAGTCCATCGGATGTGCCAGGGCTATAC 580255 Query 156780 GATGCTTT 156787 ||||| || Sbjct 580256 GATGCCTT 580263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563616672405120