Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq1959 89.7 6e-13 >seq1959 Length=43063 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 38518 TTACACCCTACACAGAAACCAGTAGGATTAATGGAGTATATGATTAAGACATACACTAAT 38577 || ||||| |||||||| |||||| ||||||||||| | || || |||||||| || Sbjct 5387 TTGCACCCAACACAGAAGCCAGTAATGCTAATGGAGTATCTAATCAAAACATACACAAAC 5328 Query 38578 AAAGGTGAAACTGTTCTTGATAGTACTATGGGAAGTGGTACAACTGGTCTTGCTTGTGTT 38637 |||| || |||||| |||| | ||||| || || || ||||| | || ||| | Sbjct 5327 GAAGGCGATGTTGTTCTAGATAATTGCATGGGTAGCGGCACTACTGGCATAGCATGTTTA 5268 Query 38638 AATCTTGATAGGAATTTTATAGGGATGGAAAGTGATGAGAAATATTTTAAGATAGCAGAA 38697 || ||||| |||| || ||||| |||| ||| | ||| || | |||||| | Sbjct 5267 AACACAGATAGATATTTCATCGGGATTGAAATGGATCAATCATACTTCAGCATAGCAAAG 5208 Query 38698 GATCGTATT 38706 ||| | ||| Sbjct 5207 GATAGGATT 5199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582802370287200