Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq2664 114 4e-21 seq4531 86.0 2e-12 >seq2664 Length=6989 Score = 114 bits (126), Expect = 4e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 976 TTCTCGACAAGTATTTTTCTGGTGAGCTTCA--GCATAAGCACAGCCTTAGCGCTGAACT 1033 |||| || | ||||| | ||| | ||||| ||| |||| | || |||||| | | Sbjct 220 TTCTTGATGATTATTTCACAGGTCAACTTCAACGCAGAAGCTCT--CTCAGCGCTCAGTT 277 Query 1034 TAACATGAAATGTATTGAGTTTGACCAAAAGAAAGATATGGCCAGCTTCTGCGGACAAGG 1093 || || |||||||| ||||||||||| |||||||||||||| || || ||||| || || Sbjct 278 GAATATTAAATGTATGGAGTTTGACCAGAAGAAAGATATGGCGAGTTTTTGCGGGCAGGG 337 Query 1094 GCTTGCCGGATGGAAGCACGAAAAGCCCGCACTTATTTCAGCAATaaaaaaaCTGGCAGG 1153 | | || || ||||| || ||||| | | || || | | ||||| ||| || | Sbjct 338 GTTGGCTGGCTGGAAACATGAAAAAGCTGTTCTGGTTGCTGAGATAAATTCTCTGACAAG 397 Query 1154 GCAGCTACAGATAACCATCCCTGGGCTGGAG 1184 ||| |||||||| |||| |||| ||||||| Sbjct 398 TCAGTTACAGATATCCATACCTGAGCTGGAG 428 >seq4531 Length=1107 Score = 86.0 bits (94), Expect = 2e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 39577 ACAAAAACCCACTACGTGCCGCGATGATAGTGTATTTGATGATGCAGGAAGGTGAGAGAT 39636 ||||||||||||| |||||||||||||| |||| ||||||||||||||| ||||| ||| Sbjct 425 ACAAAAACCCACTCCGTGCCGCGATGATCGTGTTTTTGATGATGCAGGAGAGTGAGTGAT 484 Query 39637 GA 39638 || Sbjct 485 GA 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151159956925446