Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq122 100 3e-16 seq83 89.7 5e-13 seq1959 84.2 2e-11 >seq122 Length=4874392 Score = 100 bits (110), Expect = 3e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 137231 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289 |||||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||||| Sbjct 217248 GGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTCAAG 217189 Query 137290 TCCAGCCAGGGTCACCAAAT 137309 |||||| ||| ||||| || Sbjct 217188 TCCAGCTGGGGCCACCAGAT 217169 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 1434231 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 1434172 Query 137691 CATCGTCGCCAAATTGAAGTAG 137712 || | |||| ||| ||| || Sbjct 1434171 CAGAGGAGCCATATTTAAGAAG 1434150 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 2497401 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 2497460 Query 137691 CATCGTCGCCAAATT 137705 || | |||||||| Sbjct 2497461 CAGAGGAGCCAAATT 2497475 Score = 86.0 bits (94), Expect = 6e-12 Identities = 266/406 (66%), Gaps = 8/406 (2%) Strand=Plus/Minus Query 54213 GTTGATCTGAATACCATAGTCGATACGGCGTTCACGGTTCTCTTCAAGACCACGGTTGTT 54272 ||| | ||| | || ||||| ||| | || | ||||| |||||| || |||||||| Sbjct 2806278 GTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTT 2806219 Query 54273 CTTCAGGACCACAACATCATCAAATTGATAATGCCAGATAGGGATATAGCAAGTT-GCTG 54331 |||||| |||| | || | || |||||| || ||| || | || | | |||| Sbjct 2806218 CTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGG-TAGAACAGGGTCGCTG 2806160 Query 54332 ATCCGCCACGAATACCGCCTTGAGAGCAAGACTTTAATGCCCCAGTCAGATATT--TTAT 54389 ||||| || | ||||| |||||||| ||||| | || | ||| | | | |||| Sbjct 2806159 CACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCA---CCGCGGTCTGGAAGTGCTTAT 2806103 Query 54390 -GAAAGGAACCAGGCCTGTGTGCACCATTTCACCTTTTCGGATAGGGCTACCGATGCCAC 54448 ||| |||| ||| ||||| | |||||| ||||| ||||| || | ||| Sbjct 2806102 AGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCAC 2806043 Query 54449 GAATTGCTCCAACATCAAATCCGATCCCAGCGCGTTTGGATACATAATCAACAATACTTT 54508 | || || | | || ||||| || || || | || || || | ||||| Sbjct 2806042 GGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGC 2805983 Query 54509 TGGCTGTAGCATTGATTGAGTCCAAAGTGTCACCGGTTTTGATAAGAACACAAGAACTGA 54568 ||| || || || || || || | |||| ||| | || || || || || |||| Sbjct 2805982 TGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGA 2805923 Query 54569 ATTGGCGGGTTGGGGTACGAACGCCGGACATGATGGGTGTTGGAAG 54614 | ||||| || ||||| || ||||||||||| || || || || || Sbjct 2805922 ACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAG 2805877 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 2544460 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 2544519 Query 137691 CATCGTCGCCAAATT 137705 || | |||| ||| Sbjct 2544520 CAGAGGAGCCATATT 2544534 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 2590692 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 2590751 Query 137691 CATCGTCGCCAAATT 137705 || | |||| ||| Sbjct 2590752 CAGAGGAGCCATATT 2590766 >seq83 Length=912621 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 426535 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 426594 Query 137691 CATCGTCGCCAAATTGAAGTAG 137712 || | |||||||| ||| || Sbjct 426595 CAGAGGAGCCAAATTTAAGAAG 426616 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 400915 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 400974 Query 137691 CATCGTCGCCAAATTGAAGTAG 137712 || | |||| ||| ||| || Sbjct 400975 CAGAGGAGCCATATTTAAGAAG 400996 >seq1959 Length=43063 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 137228 TTTGGCCCCGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCA 137287 || ||||| |||||||| ||||||||| ||||||||||||| |||| |||||||| Sbjct 8109 TTCGGCCCTTTAGCTCAGCGGTTAGAGCTTGCGACTCATAATCGCCAGGTCACTGGTTCA 8168 Query 137288 AGTCCAGCCAGGGTCACCAAA 137308 | ||||| |||||||||||| Sbjct 8169 AATCCAGTAAGGGTCACCAAA 8189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502427863099080