Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq43 138 3e-27 seq3962 125 2e-23 seq275 120 7e-22 seq19 118 2e-21 >seq43 Length=2082672 Score = 138 bits (152), Expect = 3e-27 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986 ||| ||||| || | ||||||||| || || |||||||| || | |||| || | |||| Sbjct 901286 CAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGACAAG-GTGCGACCAT 901228 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 |||| |||||||| || || ||||| | || || || ||||| || ||||||||||||| Sbjct 901227 CTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGGATGCCTTCTTTGT 901168 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 |||| ||||| ||| ||||||||||| | || || ||| ||||| || |||| | Sbjct 901167 CTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACTTCCAGAGTAATGG 901108 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| || || | || || || || | |||||| Sbjct 901107 TCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATT 901073 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || ||||||||||| || | | ||| | |||||||| Sbjct 901054 ACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTCAGACAAAGTACGGCCATCTTCA 900995 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| | || || |||||||| || ||||| ||||| || || Sbjct 900994 AGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGG 900935 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| |||| ||||| || || || || || | ||||| Sbjct 900934 ATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTTG 900875 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || ||||| | ||||| Sbjct 900874 CCTGTCAGGGTCTTCACGAAGATCTGCAT 900846 >seq3962 Length=6517 Score = 125 bits (138), Expect = 2e-23 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 |||||| || || ||||| ||||| || || ||||| || | |||| || | || || | Sbjct 396 AACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAG-GTGCGGCCGTCCT 338 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| ||||| || |||||||| ||||| || || ||||| || ||||| |||||||| | Sbjct 337 CGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCCT 278 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || |||||||||||| |||| ||||| || || || || || | |||| Sbjct 277 GGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCT 218 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| | || || ||||| | ||||| Sbjct 217 TGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 >seq275 Length=398669 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||| ||||| || | || || | |||||| || |||||||| || || || | Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 |||| || || |||||||| || || ||||| ||||| |||||||| |||||||||| Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCT 170606 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||| | ||| || ||| || || | ||| | || || || || | ||||| || | Sbjct 170605 CAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAA 170546 Query 195131 ACACTTGCATT 195141 | | |||||| Sbjct 170545 AGATCTGCATT 170535 >seq19 Length=2947477 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| ||||||||||| || | | || || |||||||| |||||||| || ||||||| Sbjct 340559 CTTTCTGAATATTGTAGTCAGACAATGTCCTGCCATCTTCAAGCTGCTTGCCAGCGAAGA 340618 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | || || || |||||||| || || ||||| ||||| ||||| || ||| || |||| Sbjct 340619 TGAGACGCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCT 340678 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||||| || || || || ||||| || | ||||| || || | || || |||| Sbjct 340679 CAATGGAATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 340738 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 340739 AGATCTGCAT 340748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109392569995721