Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3962 116 2e-21 seq275 113 3e-20 seq43 91.5 1e-13 >seq3962 Length=6517 Score = 116 bits (128), Expect = 2e-21 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||||||||||||||| || ||| |||| |||| || ||||| || || ||||| | Sbjct 6288 CTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 6229 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | || || ||||||||| | || | ||||||||||| || || || || || Sbjct 6228 TCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCAC--ATT 6171 Query 34912 CT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || || ||| || |||||| || | || ||||| || || || |||||||| || Sbjct 6170 CTCAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGAC 6111 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 6110 AAAAATCTGCAT 6099 >seq275 Length=398669 Score = 113 bits (124), Expect = 3e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| |||||||| ||||| || || | || |||| || ||||| ||||| ||||| | Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | || || ||||||||| | || | || |||||||| ||| || ||||||| Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCT 170606 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || || || || ||||| || | ||| || ||||| || ||||| || ||||||| Sbjct 170605 CAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAA 170546 Query 34972 AGATCTGCAT 34981 |||||||||| Sbjct 170545 AGATCTGCAT 170536 >seq43 Length=2082672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || ||||| || | | || |||| || ||||| || |||||||| Sbjct 901037 TTCCTTCTGAATATTGTAGTCAGACAAAGTACGGCCATCTTCAAGCTGCTTACCGGCAAA 900978 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||||||| | || | ||||| || || ||||| |||||| Sbjct 900977 GATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTTAGCCTTGACGTT 900918 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || || || || |||||| || | || ||||| || || || || |||||||| Sbjct 900917 CTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCAC 900858 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 900857 GAAGATCTGCATA 900845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324608820615864