Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq93 145 9e-30 seq45 118 1e-21 >seq93 Length=974399 Score = 145 bits (160), Expect = 9e-30 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 |||| || || || ||||||||||||||||| |||| |||||| || || |||||||| Sbjct 914959 TATGTGTCGATTAACAAACTGTACATTTCTGAGTGAACATTTTCCATTGCAATCTGAAAG 915018 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTT 19353 || || || || | ||||||||||| ||| ||||| || |||||||| || || ||| Sbjct 915019 CCATAGAAGCACCGTGCTTCTGTTACCTGAACTTCTTGACTGAATCTTTCCACTAAGTTT 915078 Query 19354 TCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTT 19413 ||||| || || |||||| ||| ||||| || || | ||||| ||||||||||| Sbjct 915079 TCATTGACAATCCCATCAGAAGCAGCAAAGAAGGCAAGGACATGGGAGATAAAATGTTTC 915138 Query 19414 TCATC 19418 ||||| Sbjct 915139 TCATC 915143 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTTT 18672 ||||| ||| |||| |||| ||| |||||| | ||| | ||| |||||| || Sbjct 914091 TAAAAGTCAGCATCTAAAGTAAACACATTCTCCGCCTTATTAGCCATCACTCCCCACTTC 914150 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 |||||||| ||||| | ||||||||||||||||| || || |||||||| || ||| Sbjct 914151 TGATATTCACCAACTTTCTTTTCAAAGAAATTAGTCTTGCCTTCTAATGAGATGTGCTCC 914210 Query 18733 ATAAAATCAAATGGATTTT 18751 || || |||||||| |||| Sbjct 914211 ATGAAGTCAAATGGGTTTT 914229 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 ||| |||| || || || ||||| ||| |||||||||| ||||| |||||||| || ||| Sbjct 915241 ATACCTTT-GACAAGTCAACTTCCTCAGCTGTCCAAAATGAAGCTTCTGCTTTCTTGTAC 915299 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 || ||| |||||| | | | |||||||| ||||||||||| Sbjct 915300 ATAGCCCAGATATCATGGAAACGAATAGGAAAGATAACAAATCT 915343 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/224 (69%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 18767 TTTTGA-ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATC 18825 |||||| |||| | ||| | || || | ||| |||||||| | ||| || | ||||| Sbjct 914331 TTTTGACATCCGAGTTCGATCAGAAGACGATCAGCTACAAACTCAATGTAAATTTTCATG 914390 Query 18826 ATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCT 18885 | ||||||||||| || || | | | |||||| || || || | ||||| ||||| Sbjct 914391 AGGTCACAATTCATCCCAATCATTGCACAAGGTAGAGCTTCGGTTAAGAATTCCTGTTCA 914450 Query 18886 ATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTAT----AG 18941 ||| ||| || || || || ||||| | |||||| |||||| | | Sbjct 914451 ATAGCTACAGCATCACGAATGATGTTTACAATTTCCTCTTCA----GAGGGTTTCTGAAC 914506 Query 18942 AAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 || |||||| ||||||| ||| |||||||| || ||||||| Sbjct 914507 AACATGTTTGAACATCAGACACGCAAAATCTGTGTGAAGTCCCT 914550 >seq45 Length=1811775 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || || || ||||| |||| ||| | || || ||||| || || | | ||| || | | Sbjct 850495 TTGTTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATA 850554 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 |||||||||||| ||||||| || || | |||||||||||| | || | ||| | Sbjct 850555 ATACCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATACAGTGA 850614 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 || || ||| ||||| || || ||||| || | |||||| ||| || || || Sbjct 850615 ATGTTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTCG 850674 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGA 48583 ||||| ||||| |||||||||||| ||||| | || || |||||||| Sbjct 850675 TAAATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCAACTAGA 850724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562064793907320