Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq22 138 9e-27 seq64 114 1e-19 seq11 107 2e-17 seq326 105 5e-17 >seq22 Length=2893874 Score = 138 bits (152), Expect = 9e-27 Identities = 189/263 (72%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 368786 TTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATT 368845 ||| || || || ||||||||||||||| || || ||||| |||| |||| |||| Sbjct 1889243 TTGCAGAGGTATTTGATTGCTGGTTTGAAAGTGGATCCATGCCCTATGCTCAAGCTCATT 1889302 Query 368846 ATCCATTTGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAA 368905 |||||||||| ||| ||| | ||||| || | | || || |||||||| | Sbjct 1889303 ATCCATTTGAAAACAGCAAAGAGTTTGAGAA-----ATGTTTCCCTG-CTGATTTTATTG 1889356 Query 368906 CAGAATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTA 368965 | ||| ||||| || || | || ||||||||||| || | || | || || ||| Sbjct 1889357 CTGAAGGGATTGACCAGACTAGAGGCTGGTTTTATACTCTTCTTGTTATTTCTACTGCTC 1889416 Query 368966 TTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATG 369025 | || | |||||| |||||||||| | |||| || ||| ||||| ||||| |||| Sbjct 1889417 TCTTTGGTAAACCCCCTTTTAAAAACCTTATAGCAAATGGCCTTGTTTTGGCATCAGATG 1889476 Query 369026 GTCAAAAGATGTCAAAAAGTAAG 369048 |||||||||||||||| || ||| Sbjct 1889477 GTCAAAAGATGTCAAAGAGAAAG 1889499 Score = 93.3 bits (102), Expect = 3e-13 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 367555 TGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTCATGGAATCTGTTATT 367614 ||||||||| | |||||||| || |||||| || | || || ||||||||||| Sbjct 1888105 TGGATTGACTTCAAAAATGATTACAAAACACTGTACCCTTGGTTTATGGAATCTGTGTGG 1888164 Query 367615 TGGGCATTTAAACAATTATACGA-ACGCGGTATGATTTTTGAAGGTTATAAAGTAATGCC 367673 |||| || |||||||| ||| | | | ||| || ||| | |||| ||||| ||||| Sbjct 1888165 TGGGTTTTCAAACAATTGTACAATAAGGGGT-TGGTTTATCGAGGTGTGAAAGTGATGCC 1888223 Query 367674 ATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAA 367713 ||||| | || |||||||||| | ||||| | |||||| Sbjct 1888224 TTATTCTAATGCTTGTAATACTCCACTGTCAAACTTTGAA 1888263 >seq64 Length=1295264 Score = 114 bits (126), Expect = 1e-19 Identities = 247/364 (68%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 |||| ||||| |||||||| || || | | ||| | ||| | || || ||| | || Sbjct 192001 ATTTCAGATGCCAAACGTTTGATCGGCCGTAAATTTGAAGATGCTACAGTCCAGTCGGAC 191942 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACT 550294 |||||||| ||||||||| || | | | ||| ||||| | | ||||| | Sbjct 191941 ATGAAGCACTGGCCTTTCACTGTTATCAGCGAAGGTGGCAAACCCAA-ACTGAAGGTGGA 191883 Query 550295 CATGAAGGATCTGTTAAACAATTTTCACCA-GAACAAATTTCATCTATGGTTTTAATGAA 550353 | |||| | || | ||| ||| || || ||||||||||||| | | || Sbjct 191882 GTTCAAGGGCGAGGCTAAGACTTTCTACCCTGAGGAAGTTTCATCTATGGTCCTCACAAA 191823 Query 550354 AATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTG 550412 ||||| | || || || | |||| ||||| || || | || ||| | || | Sbjct 191822 GATGAAGGAGACTGCGGAAGCATACCTTGG-CAAGACTGTCACCAACGCCGTAGTCACCG 191764 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 |||| |||||||| ||||| || || ||||| || || || |||||||| ||||||| Sbjct 191763 TACCCGCATATTTCAATGATTCTCAGCGTCAGGCCACCAAGGATGCTGGTACCATTGCTG 191704 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 ||| || || || ||||||||||| || || ||||||||||| | || ||||| || | Sbjct 191703 CACTGAACGTCCTCCGTATTATCAACGAGCCCACTGCTGCTGCCATCGCTTATGGTCTCG 191644 Query 550533 ATAA 550536 | || Sbjct 191643 ACAA 191640 Score = 86.0 bits (94), Expect = 5e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| ||||| ||||| || ||||| || || || || || | || | || || Sbjct 192486 GCTATTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGAGTATTCCAGCACGGAAAG 192427 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| ||||| |||||||| || ||||||||||| || || |||||| ||||||| Sbjct 192426 GTTGAGATTATCGCCAATGACCAGGGTAACAGAACCACCCCTAGTTATGTGGCTTTCACT 192367 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 || || || | | | |||| ||||| || || | |||| Sbjct 192366 GACACCGAGCGTCTCATTGGAGATGCCGCTAAGAACCAAG 192327 >seq11 Length=3525032 Score = 107 bits (118), Expect = 2e-17 Identities = 197/289 (68%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 552290 TATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTAT 552349 |||||| ||| | ||||| | ||||| | || ||| | ||||| ||||||||| | || Sbjct 609907 TATTGTCCTTTTGGATGTGAACCCTCTTACCCTGGGTATTGAAACTGTTGGAGGTGTAAT 609966 Query 552350 GACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTAC 552409 ||| || || ||| | || ||| || ||| || || || | | || || || Sbjct 609967 GACAAAGCTCATCCCCCGCAACACTGTCATCCCTACCAAGAAGTCACAGATCTTCTCAAC 610026 Query 552410 GTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCAC 552469 | | || || || ||||||| |||||| | | |||||| ||| | | || Sbjct 610027 AGCTGCTGACAACCAGCACACTGTTACCATTCAAGTGTATGAAGGTGAACGTCCCATGAC 610086 Query 552470 TAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGG 552529 || || || | || ||||| | ||| || | || |||||||||||||| ||||| Sbjct 610087 CAAGGACAACCACCAGCTTGGCAAATTTGATCTTACTGGCATTCCTCCTGCTCCACGTGG 610146 Query 552530 AGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTG 552578 || || |||||||| || |||||||| || |||||||| || ||| || Sbjct 610147 TGTTCCCCAAATTGAGGTCACTTTCGAAATTGATGCCAACGGTATTCTG 610195 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || || || || ||||| | || |||||||| || || |||| Sbjct 608840 ATGCTGTTGTCACCGTCCCTGCCTACTTCAATGATGCCCAGCGTCAAGCAACCAAGGATG 608899 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||| | |||||||||||||| |||||||||||||| Sbjct 608900 CTGGTACCATCTCTGGCCTGAATGTTATGCGTATTATCAATGAGCCTACTGCTGCTGCTA 608959 Query 550518 TTGCATATGG 550527 |||| || || Sbjct 608960 TTGCCTACGG 608969 >seq326 Length=250163 Score = 105 bits (116), Expect = 5e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 ||||| |||||| ||| || ||| | | ||||||||| ||||||| | | Sbjct 174750 CACCACCACAAATCTCAGCTGAAGTTCTGAAGAAAATGAAGAAAACAGCGGAAGACTACT 174809 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | ||| | ||| || || || || || |||||||| ||||| || || || | |||| Sbjct 174810 TGGGTGAGCCAGTGACTGAAGCCGTTATCACTGTACCGGCATACTTCAACGATGCGCAAC 174869 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 ||||||| |||||||||||||| ||||| || || | | ||| ||||| ||||| | Sbjct 174870 GTCAAGCAACTAAAGATGCTGGCCGTATCGCAGGGTTAGAAGTTAAGCGTATCATCAACG 174929 Query 550500 AACCTACTGCTGCTGCACTTGCATATGG 550527 |||| || || || || || || ||||| Sbjct 174930 AACCAACAGCCGCAGCGCTGGCGTATGG 174957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028964784313870