Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq3091 188 2e-43 seq122 95.1 4e-15 >seq3091 Length=6183 Score = 188 bits (208), Expect = 2e-43 Identities = 368/542 (68%), Gaps = 4/542 (1%) Strand=Plus/Minus Query 29263 GAACAACTCGATGCGCGGTACGTCGCCGTAGAGCAACTCAAGACGGTGGCGAACCTCCCA 29322 ||||| ||| ||||||||||| ||||| || ||| |||||| |||||||| |||| Sbjct 6148 GAACAGCTCTATGCGCGGTACATCGCCATAAAGCTGCTCAAGTCGGTGGCGTGCCTCTGC 6089 Query 29323 CGGCTTTTCACTGTGGGCACCGAGCGGGCTGTAAACCACCTGCTTAATCCCGGCGTGCTG 29382 |||||| |||||| |||| | | ||| | ||||||||||| | | |||| Sbjct 6088 CGGCTTAGTACTGTGTTCACCCTGACAGGAGTAGATCACCTGCTTAA--CTGAACGGCTG 6031 Query 29383 TCGCT--CAAGCCCAGCGCCGCGGGTGGCAATCAGCAGGTCTTCGGTATTTGCACGGGTG 29440 | || | ||||| | || ||| || | |||| ||| || | |||||| Sbjct 6030 GCCCTTTCCAGCCCCGTTCCCCGGACAGCCACCAGCGCTGATTCCTGGTTGCCCCGGGTG 5971 Query 29441 TGGTTGCCGCCGTTCATGCGCGTCTCGGCGTTAAGCAGGTCGAGGAAGTCGTAAAAGTCG 29500 | || ||| ||||||||| || || ||||| |||| ||| || | ||| ||||| Sbjct 5970 TAATTCCCGGGGTTCATGCGGGTTTCAGCGTTGAGCATGTCCAGAAGGTCCGTGAAGTCA 5911 Query 29501 GTGATTTCACCCTCGGCCAGCGCCTTGTTGATGCGCATCTCGGCGTTCTGATTAAGCTTC 29560 ||| || || || ||||| |||| || || ||| | |||| Sbjct 5910 TGGATCGTCTGGTCACTAAGGGCTGCGTTGAAGCGCTGTTCTGCCCGGCCATTGAACTTC 5851 Query 29561 ACCCAGGTAAAGCCCTTCATCGTGCGAACGGTAAAGCCCCAGGCCTCGGCAAGTTCGATA 29620 |||||||| || |||| ||||||| ||||||||| ||||| || || || Sbjct 5850 ACCCAGGTGAAAAGGAACATCTGGCGAACGTCAAAGCCCCACGCCTCCGCCAGCTCACGG 5791 Query 29621 GCCTCCTGGTTATGCGTGCCGGTGTACCACATCGCCAGCACCGAGTTTTCGGCGGCAAGC 29680 || ||||||| |||||| || |||||||||||| ||| || | ||| ||||| | ||| Sbjct 5790 GCTTCCTGGTCATGCGTACCCGTGTACCACATCACCAAAACAGCGTTATCGGCTGACAGC 5731 Query 29681 TCCCACACCGGCAGGCGCTTAATGTCGATTAGCTTCATGGTTGAGTAGTGATCGGCGGCA 29740 |||||||| || || | || | ||| | | ||||||| |||||||| | || Sbjct 5730 TCCCACACGGGGAGCCTTTTCAGATCGGTGATGGTCATGGTGTCGTAGTGATTACCAGCC 5671 Query 29741 GCGCCGTTGCTGATGGTGTTGCCGTAAGACCAGGGCGGATCAGCGTAGATAAGAGCGTAT 29800 || ||| |||||| ||||| ||||| ||| |||||||||||||| || || ||||| Sbjct 5670 GCACCGCGGCTGATAGTGTTTCCGTACTGCCATGGCGGATCAGCGTATATCAGGCCGTAT 5611 Query 29801 TT 29802 || Sbjct 5610 TT 5609 >seq122 Length=4874392 Score = 95.1 bits (104), Expect = 4e-15 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 41793 GCCGCAGGAAGACCGCGATAAGGTTAACGTTGACCTGGCAGCCTCCGGCGTGGCCTACAA 41852 ||||||||| || || |||||||||||||| ||||| ||| | |||||||| | || Sbjct 1624061 GCCGCAGGATGAGAAAGACAAGGTTAACGTTGATCTGGCCGCCGCAGGCGTGGCGTTTAA 1624002 Query 41853 AGAGCGCCTGAATATGCCGGTTATCGCCGAAGTGGTGATGCGTGAGCAGCCGGAGTATTT 41912 |||||| || |||||||| ||||||||| |||| ||| |||||||| || | Sbjct 1624001 AGAGCGTTATAACATGCCGGTCATCGCCGAAATGGTTGAGCGCGAGCAGCCAGAAGCGCT 1623942 Query 41913 GCGTGATTACTTCCTTGAGCGCCTTAAGTTTTATCGTGAG 41952 |||||| | || | |||| || | | ||||||| || Sbjct 1623941 GCGTGACTGGTTTCGCCAGCGTCTGATGCATTATCGTCAG 1623902 Score = 87.8 bits (96), Expect = 6e-13 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 44450 TCGTAGTTTGGGAATTACGTCTGGCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGC 44509 ||||| ||| ||||| || | |||||||||||||||||||||||||||||||||||| Sbjct 4690159 TCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGC 4690218 Query 44510 CCGCTCCA 44517 |||||||| Sbjct 4690219 CCGCTCCA 4690226 Score = 87.8 bits (96), Expect = 6e-13 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 44450 TCGTAGTTTGGGAATTACGTCTGGCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGC 44509 ||||| ||| ||||| || | |||||||||||||||||||||||||||||||||||| Sbjct 4697310 TCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGC 4697369 Query 44510 CCGCTCCA 44517 |||||||| Sbjct 4697370 CCGCTCCA 4697377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158509810253228