Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq122 607 1e-168 seq83 297 3e-75 seq109 87.8 3e-12 >seq122 Length=4874392 Score = 607 bits (672), Expect = 1e-168 Identities = 984/1394 (71%), Gaps = 50/1394 (4%) Strand=Plus/Minus Query 207568 TACAGGTCTATCTCAATATCACCCTTGGGCTTTACA-CAACAAGGTAGGATCTCACCTTT 207626 ||||| || |||||||||||||||| || ||| ||| || || || | ||||||||| | Sbjct 2809031 TACAGCTCGATCTCAATATCACCCTCGGCCTT-ACAGCAGCATGGCAAGATCTCACCCTG 2808973 Query 207627 GTTAATGAATGCTAGTGGTT---CTCT-TATCCATGTCACTTCTCCTTTGAGAAGCTTGC 207682 | | || || || |||| | || || | ||||||| ||||| | || || Sbjct 2808972 CTGCACAAAGGCCAGCGGTTTCGCGCTGTAGC----TCACTTCCCCTTTCAACAGGC-GC 2808918 Query 207683 AAC-GACAAGAACCACAATAACCTTCACGACATTGGTACTCCACCTCTACCTGATTGGCC 207741 | | | || || || || || ||||| || || || |||||||| || | | | Sbjct 2808917 ATCCGGCAGGAGCCGCAGTAGCCTTCGCGGCACTGATACTCCACGCAGACGCGGTGCGAT 2808858 Query 207742 TCTAGGGCAGCAAGTAAAGAAGGATGTTCTCCTTTTACTTCAA-CTTCT------TTATC 207794 || || ||||| || | ||||| ||||| | | ||||| || | | || Sbjct 2808857 TCCAGCGCAGCCAGCAGGGAAGGGTGTTCATCATGGCATTCAAGCTGCGCACCGGTGGTC 2808798 Query 207795 T--AGCTTAA----ATAGCTTG--ATCAGACTCATTACAGTTGGAAATCACCGAACTCGG 207846 ||| ||| | ||| || |||||| ||||||||| ||| || | || ||| Sbjct 2808797 CGCAGCGTAATGGTAGAGCGTGCCATCAGA---ATTACAGTTCGAAGTCGCTGAGGTCGT 2808741 Query 207847 CAGTATCTACTTCTGAGTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAG 207906 | | | ||||| ||||||||||| || ||||||||||| ||||| |||||||| | Sbjct 2808740 CGGCGTTGACTTCAGAGTCGATCTGTCCGACCAGGTAAGAGCTGACTTCCACTTCCTGCG 2808681 Query 207907 GAGCAACCTGAACGTTGTCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGT 207966 |||||||||| ||||| || | |||||||| ||||| ||||| || || ||||| ||| Sbjct 2808680 GAGCAACCTGCACGTTATCGGACACCAGCCACGAGTTGATCCACGGGATCGGGTTCGAGC 2808621 Query 207967 TGGTTTTGAATGGAAGATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAA 208026 |||||| || || ||||||| ||| | || | ||||||||||||||| |||||||||| Sbjct 2808620 GGGTTTTAAACGGCAGATCCAGACCAACAGCGTTCATACGGATGTTGGTGATGTACTCAA 2808561 Query 208027 CATACTGGCAGAGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGT 208086 ||||| || || || ||||| ||||| || ||||||||||| | |||||||||| | Sbjct 2808560 TGTACTGCCACAGAATATCTTTATTCAGGCCAATCATTGAACCGCCGCTGAACAGATATT 2808501 Query 208087 CAGCCCACTCTTTTTCTTGCTGAGCGGT-AGCAACGAACATGTCGTATGACTCTTGACGA 208145 | ||||||||||| || |||| || | |||| |||||| ||||| |||||||||| Sbjct 2808500 CCGCCCACTCTTTCTCCTGCTCGGCAGCCAGCA-CGAACAGATCGTAGCACTCTTGACGG 2808442 Query 208146 CACTCTGCTGCAATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATG 208205 |||||| |||||||| ||||| || ||||| |||| ||| | || |||||| | Sbjct 2808441 CACTCTTTAGCAATCTCGGCCATTTCCGGATCGTCTTCCCCACTGCGCAGCAGGTTCAGC 2808382 Query 208206 ATGTGCTGAGTACCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTA 208265 || |||||||| || || ||| || ||||| || || ||||||| || ||||| || Sbjct 2808381 ATATGCTGAGTGCCGGTCAGGTGCAGAGCTTCATCGCGGGCGATCAGCTTAATGATTTTG 2808322 Query 208266 GCGTTACCTTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAG 208325 || || ||||||||||| | || |||||||| ||||| ||||| |||||| ||||| Sbjct 2808321 GCATTGCCTTCCATCAGTTCGCGCTCGGCAAAGGCGAAAGAGCAGGCGAAGCTGACGTAA 2808262 Query 208326 AAACGAATAGCTTCAAGTGAGTTGATAGATTGCA-GAGCCAGGTACAGTGCT--TTCTTA 208382 || || || ||||| || | ||||| | | || || ||| || || ||| || || Sbjct 2808261 AAGCGGATCGCTTCCAGCGCGTTGA-CGCT--CATCAGGCAGATATAGAGCTGCTTTTTC 2808205 Query 208383 ATAGCACGAAGATTAACATTAACCTTCTCGCCATTGAC----TACGTG--GTCACCCAGA 208436 | || || || | || | || | | ||| || | |||| |||||||| Sbjct 2808204 AGCGCGCGCAGGCTGACGGTCACGGTTTTGCCCGCAACCTGGTGCGTGCCTTCACCCAG- 2808146 Query 208437 CCCAGGTAATAGTACTGGTTGATCAAGGCAATCAGTTTGTCGTAGTAATGGGAAACAGAT 208496 ||| | |||| |||| ||| | ||||| | ||||||||| || | | | Sbjct 2808145 --CAGATGCCAGTA---GTTGGTCATTTCGATCAGATCGTCGTAGTAGCCAGAGATATCT 2808091 Query 208497 GCAGCACGTTTCTTGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCG 208556 || ||| | ||| || ||||| || | || |||||||| | | || ||| Sbjct 2808090 TTGGCGCGTGACAGGATCTGCTCGTTGGTGACGATATCGTCAAAGACCAGCGCCGGGTCG 2808031 Query 208557 TTAACGATGTTCCTGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCC 208616 |||||||| || | || || || || || ||| |||||| || || ||||| || Sbjct 2808030 TTAACGATATTACGAATAATATGGGTGTACGAACGCGAGTGGATAGTCTCGGAGAACGCC 2807971 Query 208617 CAGGTCTCAGCCCATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTT 208676 ||||| ||| ||| |||||||| || ||||| ||| | ||| || || || ||||| Sbjct 2807970 CAGGTTTCAATCCAGGTTTCCAGTTCCGGGATCGAGATCAGCGGCAGCAACGCCACGTTC 2807911 Query 208677 GGACCACGGCCCTGGATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGG 208736 || | || ||||| ||||||||||| || |||||||| |||||||| ||||| || | | Sbjct 2807910 GGGCTGCGTCCCTGAATAGAGTCCAGCAGAGTCTGATACTTCAGGTTGCTGATAAAGATG 2807851 Query 208737 TGTTTCTCGTGATCTGGTAAAGCCATGTAGTCAATACGGTCACGGGAGACATCTACTTCT 208796 ||||| ||||| ||||| | ||| ||||||||||| || || ||||| || |||||| Sbjct 2807850 TGTTTTTCGTGCTCTGGCAGCGCCTGATAGTCAATACGATCGCGCGAGACGTCCACTTCT 2807791 Query 208797 TCAGGACGCCAGAAGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTC 208856 || || |||||||||||||| || || || || || || || |||||||| ||||| ||| Sbjct 2807790 TCCGGGCGCCAGAAGAAAGAGAGCTGCTTTTCGATCAGCTTTTCAAAGATGTCATATTTC 2807731 Query 208857 TGTTGGTCGTAACGAGAAACGTTGACGTTTTGACCCAGGAACATGTGTTCTTGTAATTGA 208916 || |||||| |||| | ||||| || || || | |||||| ||||| | ||| Sbjct 2807730 TGCTGGTCGAAACGCGCCACGTTTACCGGCTGTCCGAAGAACATCGGTTCTAACAGTTGG 2807671 Query 208917 TCGTTTTTGTTTTG 208930 | ||||| || || Sbjct 2807670 TTATTTTTATTCTG 2807657 Score = 104 bits (114), Expect = 4e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 16817 TCTCTAATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCC 16876 |||| ||| |||| | |||| || |||||||| ||||||||||||||||||||||||| Sbjct 2590771 TCTCAAATATGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCC 2590712 Query 16877 GTTCTACCGACTGAACTACA 16896 |||||||||||||||||||| Sbjct 2590711 GTTCTACCGACTGAACTACA 2590692 Score = 102 bits (112), Expect = 1e-16 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 16817 TCTCTAA-TGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGC 16875 ||||||| | |||| | |||| || |||||||| |||||||||||||||||||||||| Sbjct 2544540 TCTCTAAATATGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGC 2544481 Query 16876 CGTTCTACCGACTGAACTACA 16896 ||||||||||||||||||||| Sbjct 2544480 CGTTCTACCGACTGAACTACA 2544460 Score = 100 bits (110), Expect = 5e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 16822 AATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCT 16881 ||| |||| | |||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 1434157 AATATGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 1434216 Query 16882 ACCGACTGAACTACA 16896 ||||||||||||||| Sbjct 1434217 ACCGACTGAACTACA 1434231 Score = 100 bits (110), Expect = 5e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 16822 AATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCT 16881 ||| |||| | |||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 2497475 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 2497416 Query 16882 ACCGACTGAACTACA 16896 ||||||||||||||| Sbjct 2497415 ACCGACTGAACTACA 2497401 Score = 98.7 bits (108), Expect = 2e-15 Identities = 78/93 (84%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 16034 AAATTATGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGTCACCTGCT 16093 ||| | |||||||||| || ||||||||| ||||||||||||||||||||| | |||| Sbjct 217166 AAAATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCT 217225 Query 16094 CTAACCGTCTGAGCTACGGGGCCGGAATGGCGC 16126 |||||| |||||||| |||||| || ||||| Sbjct 217226 CTAACCAACTGAGCTATGGGGCCTGA--GGCGC 217256 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 16126 CGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATCC-ACTG 16184 ||||||||||||||||||||||||||| | ||||||||||| |||||||||| |||| Sbjct 814411 CGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCCAACTG 814352 Query 16185 AGCTAAGAGCGC 16196 ||||||| |||| Sbjct 814351 AGCTAAGGGCGC 814340 >seq83 Length=912621 Score = 297 bits (328), Expect = 3e-75 Identities = 494/714 (69%), Gaps = 0/714 (0%) Strand=Plus/Minus Query 207935 CCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTTGAATGGAAGATCCAAACCGAT 207994 ||| || |||||||| ||||||||||||||| ||||||||||| || |||| || | Sbjct 582601 CCACGAATTAATCCAAGGAATTGGGTTAGAGCGAGTTTTGAATGGTAGTTCCAGTCCCAC 582542 Query 207995 CGCCTGCATACGGATGTTGGTAATGTACTCAACATACTGGCAGAGGATCTCTTTGTTCAG 208054 || |||||||| || |||||||| || || | || |||||||| || ||||| |||| Sbjct 582541 GGCATGCATACGAATATTGGTAATATATTCGATGTATTGGCAGAGAATATCTTTATTCAT 582482 Query 208055 ACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCACTCTTTTTCTTGCTGAGCGGT 208114 |||||||| || ||||| |||||| || || |||||||||||||| |||| ||| | Sbjct 582481 TCCGATCATCGAGCCATCACGGAACAGGTATTCTGCCCACTCTTTTTCCTGCTCAGCAGC 582422 Query 208115 AGCAACGAACATGTCGTATGACTCTTGACGACACTCTGCTGCAATCTCAGCCATCTCTGG 208174 ||| | || | ||||||| ||||| || |||||||| ||| || || Sbjct 582421 CTTTTTGAATAGCTCAAAGCACTCTTGCTCGCACTCAGCAGCAATCTCTTTCATTTCCGG 582362 Query 208175 ATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTGAGTACCAACCATGTGAAGTGC 208234 |||||||| ||| || ||| || | || ||||| || || || ||| || || Sbjct 582361 ATCATCTTCACCGCTTCGCAGCAGATTTAGCATATGCTGTGTTCCCGTCAGGTGCAGGGC 582302 Query 208235 TTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACCTTCCATCAGCTTACGTTCGGC 208294 |||||| |||||||| | ||||||||| || |||||||||||||||| ||| ||||| Sbjct 582301 TTCGTCCCGTGCGATAAGACGGATGATCTTGGCATTACCTTCCATCAGCTCACGCTCGGC 582242 Query 208295 AAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAATAGCTTCAAGTGAGTTGATAGA 208354 || |||||||| ||||| ||| |||||||||||||| ||||| || | |||| Sbjct 582241 GAACGCGAATGAACAAGCAAAGCTCACGTAGAAACGAATGGCTTCGAGGGCATTGACGCT 582182 Query 208355 TTGCAGAGCCAGGTACAGTGCTTTCTTAATAGCACGAAGATTAACATTAACCTTCTCGCC 208414 ||| ||||| || |||||| | | || || ||| | || | | || Sbjct 582181 CATCAGGCAGAGGTAAAGCTGTTTCTTTAATCCGCGCAGGGAAACGGTCACGGTTTTTCC 582122 Query 208415 ATTGACTACGTGGTCACCCAGACCCAGGTAATAGTACTGGTTGATCAAGGCAATCAGTTT 208474 || |||||||| ||| | || | | |||| ||| | ||||| | Sbjct 582121 TGCAACCTGATGGTCACCTTCACCTAAAAGATGCCAGTAGTTGGTCATTTCGATCAGGTC 582062 Query 208475 GTCGTAGTAATGGGAAACAGATGCAGCACGTTTCTTGATATGTTCGTTATCTACAACGTC 208534 ||| ||||| | |||| | | ||||||| | ||| || || || || | || Sbjct 582061 GTCATAGTACTTAGAAATATCTTCAGCACGGCGCAGGATCTGGTCATTCGTCACGATATC 582002 Query 208535 ATCAAAGACAATGGAAGGATCGTTAACGATGTTCCTGATGATGTGAGTATAGCTACGACT 208594 || || || | | || ||||| ||||| || | || || ||||| || ||| Sbjct 582001 GTCGAATACTAGAGCCGGGTCGTTCACGATATTACGAATAATATGAGTGTAAGAACGTGA 581942 Query 208595 GTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCATGTTTCCAGCTCTGGGAT 208648 |||||| ||||| ||||| ||||||| ||| ||||||||||||| || ||||| Sbjct 581941 GTGGATCGTTTCGGAGAACGCCCAGGTTTCAACCCATGTTTCCAGTTCCGGGAT 581888 Score = 100 bits (110), Expect = 5e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 16822 AATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCT 16881 ||| |||| | |||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 400989 AATATGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 400930 Query 16882 ACCGACTGAACTACA 16896 ||||||||||||||| Sbjct 400929 ACCGACTGAACTACA 400915 Score = 100 bits (110), Expect = 5e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 16822 AATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCT 16881 ||| |||| | |||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 426609 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 426550 Query 16882 ACCGACTGAACTACA 16896 ||||||||||||||| Sbjct 426549 ACCGACTGAACTACA 426535 >seq109 Length=705085 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 16119 AATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTAT 16178 ||||| ||||||| ||||||||||||| ||||| | ||||||||||| |||||||| Sbjct 321824 AATGGTACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGGTGCTCTAT 321765 Query 16179 CC-ACTGAGCTAAGAGCGCC 16197 || ||||||||||| ||||| Sbjct 321764 CCAACTGAGCTAAGGGCGCC 321745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911023072697160