Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq122 289 9e-74 >seq122 Length=4874392 Score = 289 bits (320), Expect = 9e-74 Identities = 649/967 (67%), Gaps = 6/967 (1%) Strand=Plus/Minus Query 15540 TGGCTCGTTATTGACCTGAGGCTTCGTGTCGTAGACCTCGTAGCTGCCTGGCTTCACATC 15599 ||| || || || | |||||||| ||||||| | | || ||||| ||||| | ||| Sbjct 2922313 TGGTTCATTGTTAATCTGAGGCTCTGTGTCGTGAATTTGATACCTGCCAGGCTTGATATC 2922254 Query 15600 GTACAGAGGCAGACCTAGGTGCGAGGAAACAATCGCAACAGAATGGTTGTCAGGCACTTC 15659 | || || |||| ||| || || ||||| || ||||| ||||||||||| ||| Sbjct 2922253 AAATAGCGGTTTGCCTAAGTGAGAAGACACAATGGCCACAGAGTGGTTGTCAGGTACTGT 2922194 Query 15660 AAATCGCTGCAATTCACCACTCTGGAAAGCGCTTGGCTT-CTTGTCTTTCAGATTTCTCG 15718 |||| || | || |||| || |||| ||| || || | |||| | ||||| | Sbjct 2922193 AAATGTCTTAAGCTCGCCACCTTGAAAAGAGCTGGGTTTAGATTTCTTAAGGTTTTCT-G 2922135 Query 15719 CTCGCGCTTCGATATTGTCGAACATGGCTGAAAATGCCTTGCTCGCCTTTTTGTCGTATT 15778 ||| | | ||| | || ||||| || ||||| || ||||| || || || |||| Sbjct 2922134 CTCTTGATAGGATTTCATCAAACATTGCAGAAAAGGCTTTGCTAGCTCGCTTATCATATT 2922075 Query 15779 GCGTAGAGCGATTGAAGACGAAGGAGTGAATAACAGGGACCGGAGCGCCAAATTGATTAC 15838 |||||||| || || || || || || || || || |||| || || || | | Sbjct 2922074 CAGTAGAGCGGTTAAAAACCAAAGAATGTATCACCGGCACCGCTAAACCGAAGTGGATGC 2922015 Query 15839 TTCGGTCAAAGAAGCTAACGGCCTTGTAGGCGTCCTGAACATCAATCCCGTAGACCAGTT 15898 ||| ||| ||||| |||| | ||| | | |||||| ||| |||||||| || | Sbjct 2922014 ATCGATCATAGAAGTTAACAGATCGGTAATCATTCTGAACCCCAACACCGTAGACAAGCT 2921955 Query 15899 GACCAAGGTTGTCGATCGCTCGCGCGGAAGAGCCATCGCTCGAACATGGGACGATAATCT 15958 | | ||||||||| | || | ||| ||||| |||||||| || |||||||| || || Sbjct 2921954 GGCTAAGGTTGTCTACGGCCCTCGCCGAAGACCCATCGCTTGAGCATGGGACAATTATGG 2921895 Query 15959 GGTTGGCAGCCAGAAGCGCGAGTTCAGTGTAGGCCGCGAAGCTGGGATTGCAGTCGATGA 16018 || ||||| | || | || || || || || | || || || ||||| || |||| Sbjct 2921894 CATTTGCAGCAATCAGAGAAAGCTCGGTATAAGCTGAAAAACTAGGGTTGCAATCTATGA 2921835 Query 16019 AGCAGGTGGTTTCTTGCTCACCAAGGTAATTGCCACAGGCCGTTACCAGATCCTTGAGCC 16078 | || || | || || | | | |||| || | || || |||| Sbjct 2921834 AACATACTGTATTTTCAATTCCTTGCTGCTGAGCACAAGCAACCAAAAGGTCACGAAGCC 2921775 Query 16079 AGAGGTGGACATTCTTCCAAGAGTCTGCCGGCAGGCTGACGGCGCTCAATTGGTTGATTA 16138 | || |||| | | |||||||| || | |||||| | ||| ||| | |||||| || | Sbjct 2921774 ACAGATGGATACTTTTCCAAGAATCAACGGGCAGGTTCACGCTGCTAAGTTGGTTAATGA 2921715 Query 16139 CAGGAGCCTGGACCTCAAGACTTGGATCACCTGCCAGGCAGTAA-AGATTGTCTGGCATG 16197 | |||| || || || | ||| ||||| || || | || || | ||| || || ||| Sbjct 2921714 CCTGAGCTTGAACTTCTAAACTAGGATCGCCAGCGA-TAAGAAACACATTTTCGGGAATG 2921656 Query 16198 TTGGCGTTGTGATCC-TTCCCTTTCACCAAAAAAGACGTCTCACTACCCGTAATCGCATG 16256 | || || ||| | || | |||||| || || || |||||| ||| Sbjct 2921655 CTTTTATT-TGTTCCATGAACTGGAATCAAAAAGCTTGTTTCTGAGCCAGTAATCATATG 2921597 Query 16257 TGCGCTACGTGTGCGGGCATCAAAATACCCGCCGATGGTTTTGCGCTGAGCAATGAGCTT 16316 || ||| || || | ||||| || ||||| | |||| | ||||| || || | Sbjct 2921596 TGGGCTTCGAGTTCTTCTGTCAAAGTATCCGCCAACGGTTCTTCGCTGCTGGATTAGGTC 2921537 Query 16317 TCCAAGCGCAGCGGCACCTTTGCCGTTACCGCCAAGAATGATCTCCGAAAGGTTGGCCTG 16376 ||||| || || ||| | || ||||| ||||| | ||| || ||||| || ||||| Sbjct 2921536 AGCAAGCCTTGCTGCTCCTGTACCATTACCTCCAAGGAGGATTTCAGAAAGATTCGCCTG 2921477 Query 16377 CGGGCACATGTCAGCGACGATGACGCGCTTTTCAGGATGAATTCGTGCATATTCTGACGC 16436 |||||||||||||| | || ||||| || || || | || |||||||| | || Sbjct 2921476 TGGGCACATGTCAGCAAAAATTACGCGTTTATCTGGGTTTTGGCGCGCATATTCGGTTGC 2921417 Query 16437 GATAGCAAACGTCAGGTAAGTCTTACCGACCCCACCTTTGTTGTTCCATATCGCATACGA 16496 |||||||| | || || |||||||| || || |||||||||||||| |||||||| || Sbjct 2921416 CATAGCAAATGAGAGATAGGTCTTACCCACTCCGCCTTTGTTGTTCCAGATCGCATATGA 2921357 Query 16497 TTTCATG 16503 ||||||| Sbjct 2921356 TTTCATG 2921350 Score = 125 bits (138), Expect = 2e-24 Identities = 129/166 (78%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 21293 CTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAG 21352 ||||||| ||||| | || ||| | | |||||||||||| ||||||||||||||| Sbjct 4793589 CTGGCGAAAGAGCTGCAGGTGCCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCCCTGGAG 4793648 Query 21353 CAGCG-GCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCA 21411 ||||| |||| | ||||| ||| | | || |||||||| || ||||| | |||||||| Sbjct 4793649 CAGCGTGCCG-ATAAGCGCCCGGTCAACTCCGACCTGCGTGAATCCGGCTCCATCGAGCA 4793707 Query 21412 GGACGCCGATGTGATCATGTTCGTGTACCGCGACGAGGTCTACCAC 21457 ||| ||||| |||||||||| | ||||| || ||||| || ||| Sbjct 4793708 GGATGCCGACCTGATCATGTTTATCTACCGTGATGAGGTGTATCAC 4793753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157098715208582