Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq122 197 5e-46 >seq122 Length=4874392 Score = 197 bits (218), Expect = 5e-46 Identities = 326/468 (70%), Gaps = 2/468 (0%) Strand=Plus/Minus Query 10648 CATGCATCTGTCGATTGATTCGCTTAAAGAAGCTGGCGCCTTCACTGGGGCTCCTATCGA 10707 |||| | ||| | | ||||| || ||| || | ||||| ||||| || |||| | || Sbjct 2934779 CATGAAACTGACACTCGATTCACTAAAAAAATCCGGCGCATTCACAGGTCGTCCTGTGGA 2934720 Query 10708 GAAAGAGATCACCTGGAAACAGGGCGATAAGGAACTGACTGCAACCGTGTACGTCCGGCC 10767 ||| | ||||||||||| ||| | ||| | ||| | || || || |||| | |||| || Sbjct 2934719 AAAACAAATCACCTGGAAGCAGCGTGATGAAGAATTAACAGCCACGGTGTTCATCCGACC 2934660 Query 10768 CTTGTCGTACAGCACAGCTGTTTCTGACCTTCTGGCC-ATGAATGGCAAGGTGGATGGCG 10826 ||| ||| || || |||||| | |||||| ||| |||||||| || ||| Sbjct 2934659 GTTGGGTTACCACAGCGCCACATCTGACGTACTGGCCCATGTG-GGCAAGGTTGACGGCA 2934601 Query 10827 TAGCGGGTCGGATAGCCGCGTCAATCGTGGATGAAGAGGGTAAGCCGGTATTCACGCCGG 10886 | || || || || || || ||| |||||||| || | ||||| |||||||| Sbjct 2934600 TTGCCGGGCGTATCGCAGCCAGCATCTGTGATGAAGATGGCCACCCGGTCTTCACGCCTC 2934541 Query 10887 CAGATATCACCGGCGAGGCCGATCCCGGTCGCGGCGCGCTGGATGGAAACCTGACCATCG 10946 ||||| || |||||||| || |||| |||||||||||| ||||| ||||| |||| Sbjct 2934540 AGGATATTACTGGCGAGGCTGACCCCGATCGCGGCGCGCTTGATGGCGCACTGACTATCG 2934481 Query 10947 CCCTGCTCACCGTGATCGCCGAGGTGAACAACCTGGGAAAGACGACCAGCTCAGCGAACT 11006 | || || | || ||||||||| | ||||||||||| |||| ||||||| Sbjct 2934480 CGCTCCTGGTTGCCATTCAGGAGGTGAACGATCTGGGAAAGACCACCAACTCAGCGCCGA 2934421 Query 11007 AGATGAGGTGTGGCATGAGCTGGTGATGTGCGGGATTGGCGGCAGAACCATCGCAGAAGC 11066 ||| || | ||| |||||| || | ||| || ||||| ||||||||||| ||||| Sbjct 2934420 AGACGAATTCTGGTGTGAGCTCGTCCTCAACGGAATCGGCGGAAGAACCATCGCCGAAGC 2934361 Query 11067 CAAGTCGCGTCTCACCTACCGGGAGTTCCTGAGCTGGTGCAAGTTCCG 11114 || |||| || |||||||| || | |||| |||| ||| Sbjct 2934360 CAGAGAAAACCTCAGCTTCCGGGAGTACCAGCTCTGGGTTAAGTACCG 2934313 Score = 80.6 bits (88), Expect = 9e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10497 TTCTTCCGCCGACGCGCACCTGGTTCGTCTTCCGCGGCTATGTGAGCGACTTCCCGTTCG 10556 |||| ||| ||||||||||||| |||||| ||||| || ||||||||||| | Sbjct 2934982 TTCTGCCGGATACGCGCACCTGGTATGTCTTCAAAGGCTACGTTGCTGACTTCCCGTTTG 2934923 Query 10557 ATTTTGCAGCCAACGCTGTGGTGACCTCTACCGCAACCATTCAGCGCTCCGGCGGTTCCG 10616 | || |||||| | || ||| | ||||| |||||||||||||| |||| | || Sbjct 2934922 ACTTCCAGGCCAACACGGTTGTGCAGACGACCGCCACCATTCAGCGCTCAGGCGCTGGCG 2934863 Query 10617 CCTGGATTC 10625 | ||||||| Sbjct 2934862 CGTGGATTC 2934854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172742351655916