Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq122 275 6e-69 seq83 122 8e-23 >seq122 Length=4874392 Score = 275 bits (304), Expect = 6e-69 Identities = 688/1021 (67%), Gaps = 62/1021 (6%) Strand=Plus/Minus Query 117517 TTCCTGCGGTGTTACCTGCACATTCCCGGTATTCAGGTGGCTGTTGATCCAAGGGATTGG 117576 ||||||||| | |||||||| || ||| ||| ||||||||| ||||| || Sbjct 2808688 TTCCTGCGGAGCAACCTGCACGTTATCGGACACCAGCCACGAGTTGATCCACGGGATCGG 2808629 Query 117577 GTTCTTGGTCGGTTTCCCGATCAGTTCACCAAGGCCAACCGCCCGCATACGTTGATCT-- 117634 |||| | | ||| ||| || || ||||| || |||||| ||| | Sbjct 2808628 GTTCGAGCGGGTTTTAAACGGCAGATCC---AGACCAACAGCGTTCATACG--GATGTTG 2808574 Query 117635 GTGATGTAGTCGATGTAACCGTC-CAGCATACCTTTGTTCAGACCGATCATCGAACCGTC 117693 |||||||| || ||||| | | | ||| ||| |||| ||||| || ||||| |||||| | Sbjct 2808573 GTGATGTACTCAATGTA-CTGCCACAGAATATCTTTATTCAGGCCAATCATTGAACCGCC 2808515 Query 117694 TTTGAACAGGAAGCTGCCCCAGTCTTTCTCCTGCACCGATGCGTCGATAAAGCCCTGTCG 117753 ||||||| | |||| |||||||||||| | | || | || | ||| Sbjct 2808514 GCTGAACAGATATTCCGCCCACTCTTTCTCCTGCTCGGCAGCCAGCACGAA--CAGATCG 2808457 Query 117754 T-GC-CTCTTCGTAGCAATCCTCTGCCA-CACGAGCAAA--CAGATCACCTTCGTTACCG 117808 | || ||||| ||| || | || | | || || | |||| |||| || | Sbjct 2808456 TAGCACTCTTGACGGCACTCTTTAGCAATCTCGGCCATTTCCGGATCGTCTTCCCCACTG 2808397 Query 117809 TTCTGCATTTCTTTCAGCATATACTGAGTGCCGGACAAATGCAAGGCTTCATCACGGGCA 117868 | ||| | ||||||||| ||||||||||| || |||| |||||||| ||||| Sbjct 2808396 CGCAGCAGGT---TCAGCATATGCTGAGTGCCGGTCAGGTGCAGAGCTTCATCGCGGGCG 2808340 Query 117869 ATCAGTTCAATAATGTTGGTGTTGCCCAGCATTACCCCGCGCTCGCCGAACGCAAATGAG 117928 ||||| | ||| || |||| ||||| ||| | |||||||| | || || || ||| Sbjct 2808339 ATCAGCTTAATGATTTTGGCATTGCCTTCCATCAGTTCGCGCTCGGCAAAGGCGAAAGAG 2808280 Query 117929 CAGGCGAAGCTCACGTAGAAGCGGATCGCTTCCAGTGCGTTGATATTGTGCAGGCACAGG 117988 ||||||||||| ||||| ||||||||||||||||| ||||||| | |||||| | Sbjct 2808279 CAGGCGAAGCTGACGTAAAAGCGGATCGCTTCCAGCGCGTTGACGCTCATCAGGCAGATA 2808220 Query 117989 TACAGC----------GCACGGGCA---TGAGTGT-ACGGGTCAACCGGAA----GGTTC 118030 || ||| || || ||| ||| || |||| | || | | ||| | Sbjct 2808219 TAGAGCTGCTTTTTCAGCGCGCGCAGGCTGACGGTCACGGTTTTGCCCGCAACCTGGTGC 2808160 Query 118031 AGGGCCTTG---CGGCAGTT--CAGT--TCGTACAGGTC-ATCATA-CATCTTCGTCACC 118081 | ||||| | |||| | |||| | | || || |||| | | || | || || Sbjct 2808159 -GTGCCTTCACCCAGCAGATGCCAGTAGTTGGTCATTTCGATCAGATCGTCGTAGTAGCC 2808101 Query 118082 G-------CCTCGGCGCGGGCGATAATCTCCGGCGACTTCATGATGTCGTCAAAGACGAT 118134 | | |||||| | | |||| | | | ||| ||||||||||| | Sbjct 2808100 AGAGATATCTTTGGCGCGTGACAGGATCTGCTCGTTGGTGACGATATCGTCAAAGACCAG 2808041 Query 118135 CGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGAGCGAGAGTGGATAGTCTC 118194 || ||| || | ||| ||||| || ||||||||||| || || |||||||||||||| Sbjct 2808040 CGCCGGGTCGTTAACGATATTACGAATAATATGGGTGTACGAACGCGAGTGGATAGTCTC 2807981 Query 118195 ACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTTGTGTCGGA-CACGATCGGGAGCA 118253 ||||||||| || || | ||| |||||||| || | ||| | |||| | ||| Sbjct 2807980 GGAGAACGCCCAGGTTTCAATCCAGGTTTCCAG--TTCCG--GGATCGAGATCAGCGGCA 2807925 Query 118254 G-AACTGCA--TTCGGCCCACGGCCCTGTACAGAATCCAGAAGGATCTGGTACTTCAGGT 118310 | ||| || ||||| | || ||||| | ||| ||||| || |||| |||||||||| Sbjct 2807924 GCAACGCCACGTTCGGGCTGCGTCCCTGAATAGAGTCCAGCAGAGTCTGATACTTCAGGT 2807865 Query 118311 TGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAGTCGATACGGTCACGGG 118370 ||||||| |||||||| || ||||| || ||||| | ||||| ||||| || || | Sbjct 2807864 TGCTGATAAAGATGTGTTTTTCGTGCTCTGGCAGCGCCTGATAGTCAATACGATCGCGCG 2807805 Query 118371 TCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCTCGATCAGCTTCTCGA 118430 |||| ||||||||||| ||||||||||| | || ||||| ||||||||||| || | Sbjct 2807804 AGACGTCCACTTCTTCCGGGCGCCAGAAGAAAGAGAGCTGCTTTTCGATCAGCTTTTCAA 2807745 Query 118431 ACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTCTCGCCGAGGAACATCG 118490 | || | | |||||||||||| | || | ||||| | || |||| |||||||| Sbjct 2807744 AGATGTCATATTTCTGCTGGTCGAAACGCGCCACGTTTACCGGCTGTCCGAAGAACATCG 2807685 Query 118491 G 118491 | Sbjct 2807684 G 2807684 Score = 228 bits (252), Expect = 8e-55 Identities = 865/1332 (65%), Gaps = 68/1332 (5%) Strand=Plus/Minus Query 119159 CGAGGTGGCTCAAAACCATTCGTGGAGTTAGTGATCTGGCTGGATGTCTCGCAAGGCATC 119218 || ||||| |||| ||| || |||| ||| | ||||||| || ||||| | |||||| Sbjct 2807174 CGCGGTGGTTCAATACCGTTGGTGGCGTTCGAGATCTGGGAAGAGGTCTCAGACGGCATC 2807115 Query 119219 ATCGTGGACAGCGTGGAGTTACGCAGGCCATGAATCGCGATATCGA--CACGCAGCTTTT 119276 | | || ||||| ||||| |||||||| || | | ||| |||||||| || Sbjct 2807114 AGGGCAGAGAGCGTAGAGTTGCGCAGGCCGTGGGTTTTCAC--CGATTCACGCAGCGCTT 2807057 Query 119277 CCCAGTCCATCTTCAGTTCCGCAGTGTGGAGAGCATCCACCTCTTTTTTGTAACGGTCGA 119336 ||||||||| | ||| || | || ||||||| || || || || ||||| Sbjct 2807056 CCCAGTCCAGCAGCAGCGGCGTATCACAGATCGCATCCAGGTCCTTCTTATAGGTGTCGA 2806997 Query 119337 TCGGCAGAATGCCCTGAGAGTAAGTTGTCTCGTGGAAGAGATCACATTTGCCCAGTTCTT 119396 |||||| ||| ||||| | || || || |||| || || ||| |||| Sbjct 2806996 TCGGCATAATACCCTGCGCATAGGTGGTTTCGTTAAACCACGGGCAGGCACCCTGTTCGA 2806937 Query 119397 TTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATGCTTCAG----CCAGTTCG 119452 | ||||| || || |||| ||| | | ||||| | |||||| | || || Sbjct 2806936 TAGCCAGATCGTTAGAGGCTTTCAGCAACCAGTACTGAATGGCTTCAAAGGTCTGGTGCG 2806877 Query 119453 TGAACAGCGTTAGC--TGCACGAGGGTCGCTGTACTTCATCCCGCGCTTCGCCAGGTAGT 119510 | | | | ||||| ||| |||| ||| || ||| |||||||||||||| Sbjct 2806876 TCAGGA-CATTAGCGCTGCC-----GTCGGAGTAACGCACGCCGTTCTTCGCCAGGTAGT 2806823 Query 119511 ACGCGAGGTTGGTCCAGCCAATCCCCAGTGTACGGCGCAGC-TTGGTCTTCTCTGCC--G 119567 | ||| |||| || |||||| ||||| |||||||| | ||| | | |||| | Sbjct 2806822 AAGCGTAGTTGATCACGCCAATACCCAGAGTACGGCGACCCATTGCGCCACGCTGCGCGG 2806763 Query 119568 CCAGAACCGGGTAGTTCTGATAGTCCAGCAGTCGGTCCAGAGCACGAACC---AGTGTAC 119624 || | | ||||||| ||| ||||||||||| ||||| ||||| ||| || || Sbjct 2806762 CCGGGATTGGGTAGTCCTGGTAGTCCAGCAGGGCATCCAGCGCACGCACCGCCAGGGTT- 2806704 Query 119625 GGACAGGCTCACGCATGTCTTCCAGCTTCTCGATCTTGCCAAGGTTAATGGCAGACAGAG 119684 | ||| ||| ||| ||| ||||| |||| ||| ||| ||||||| || ||||| | Sbjct 2806703 -GCCAG-CTCCTGCAGGTCGTCCAGGCTCTCAATCGCGCCGAGGTTAAACGCCGACAGCG 2806646 Query 119685 TACACAGGGCTACCTCGCCCGGGTCTTCTGGATCGTTAATGTCGTTGATCGGATGCGTCG 119744 |||| || || | ||||| || | | ||||||| || | ||| | |||| Sbjct 2806645 TACAGAGCGCGATTTCGCCA-----TTTTCG-TCGTTAACATCCAGCAGCGGTTTGGTCG 2806592 Query 119745 GCAGCGCGATCTCCATACACAGGTTGGACTGCTTCACCGGGGCCTGTTTAGGGTCAAACG 119804 |||| |||||||||| |||||||| ||||| ||| || || | |||||||| | Sbjct 2806591 GCAGTGCGATCTCCAGGCACAGGTTAGACTGGCGCACTGGCGCGATTGCCGGGTCAAATG 2806532 Query 119805 GGCTGTTGGTATTACAGTGGTCAACGTGCTGAACATAAATACGACCAGTTTGTGAACGCT 119864 |||||| ||| || ||||||||||||| ||||| || ||||| || || | || | Sbjct 2806531 GGCTGTGGGTGTTGCAGTGGTCAACGTTCTGAATGTAGATACGGCCGGTAGAGGCGCGTT 2806472 Query 119865 CCTGCCCAAAGACAGAGAATGCGTCCGCCGCAGGGATAGACTTCTTCGCCACGGAAG-GA 119923 ||||| | | ||||| || |||| | || ||| |||| | Sbjct 2806471 CCTGCATCATCAGCGAGAACAGATCTACCGCCTTCACGCGCTGCTT----GCGGATGCTG 2806416 Query 119924 TCTGCTTCC----AGTTCCTCGTAAAGCTGTTGGAATTTCTCCTGATCAGAGAAGAAATA 119979 || ||| | | || | ||| || | | || | |||||||| | |||||| Sbjct 2806415 TCGTCTTTCTCGTATTTGGT-GTACAGGCGCTCAAACTCATCCTGATCGGCGAAGAACGC 2806357 Query 119980 TTCGTACAGCTTACCGCCAGCCACGTTCGGATG----GAACAACGTGATGTTCTTGCCCT 120035 || |||| ||||| |||| ||||| | ||||| || || | | |||| Sbjct 2806356 GTCATACA------AGCCAGGCACG-TCGGACGGGCTGAACAGAGTAATCTCTTCACCCT 2806304 Query 120036 GCTGGAGGCGGGTATAAAGCAGCTTGTTGATCTGGAGGCCGTAGTCCACATGGCGAGCAC 120095 | | ||||| ||| | ||||||||| | ||| | ||||||||||| ||| || | | Sbjct 2806303 TCAGCAGGCGCTGATACATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGC 2806244 Query 120096 GAGTGCTCTCGGTGCCACGGTTGTTCTTCAGAACGATCAGGCTCTCAAAATCCCAGTGCC 120155 | ||| || ||| |||||||||||||| || | |||||| || | ||| |||| Sbjct 2806243 GGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCC 2806184 Query 120156 ACATCGGGTAGAAATAGTTAGCCGATGCCTTACGGACGCCGCCCTGAGAGGTCCACCCAA 120215 |||| |||||||| | | || | | || ||||||||||||||| || | Sbjct 2806183 ACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCA 2806124 Query 120216 GAGACTCTTGGTACATGCGGACA-ATCGGCACGGTGCCTGCGTGTTTAACCTCACCACCA 120274 | | | | | ||| | | | ||| | | ||| | ||| | ||||| || Sbjct 2806123 CCG-CGGTCTGGAAGTGCTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCG 2806065 Query 120275 CGAAT--GGCAGAATCCTGACCACGAATCATGCCGAAGTTCAGGCCGATCCCGGCTCGTT 120332 || || ||| | || | |||| || ||| ||| | |||||| ||||| || | Sbjct 2806064 CGGATCGGGCTG--CCCAGCGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCT 2806007 Query 120333 GAGCCGCATA-TTTACCCT-GCGC-CGTGTTGGCGTTAAAGATCTGG--TCGATATTATC 120387 ||| | || || || | |||| | | ||||||||| ||| || | | || Sbjct 2806006 GAGAAACGTACTTCACAATCGCGCTGGAGGTGGCGTTAA-----TGGAATCAAGGCTGTC 2805952 Query 120388 ACCAGACTCAATCAGTACGCAAGAGCTAAACTGACGGGTCGGGGTACGAACACCCGCCAT 120447 || |||||||||||||||| ||||| ||||| || |||||||| || || || | ||| Sbjct 2805951 GCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACAT 2805892 Query 120448 GATCGGGGTCGG 120459 || || ||||| Sbjct 2805891 AATTGGCGTCGG 2805880 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 141783 AGCAGAAAGGCTCTGTTGAACTGCTGTACGATGTGTTCGGCGGCGACCTGAACTCCAAAG 141842 |||||||||| || || ||| |||||| || | ||||||||| | || ||| | Sbjct 3983566 AGCAGAAAGGGTCGGTCGAAGTGCTGTGGGAGATCTTCGGCGGCACGGTCAATGCCAGGG 3983507 Query 141843 GCTATCGCACCTTGGATACTCACGTCGGCCTGATTTACGGTGACTCCATCACCGTGGCTC 141902 |||| |||| | ||||| || ||||| ||||| ||||| || ||| | | | Sbjct 3983506 GCTACAAGGTGCTGGACCCGCACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGC 3983447 Query 141903 GTGCCAAAGAGATCTTCGAG-CGCCTGGAAGCAAAAGGCTTTGCATCGAACAACGTTGTG 141961 ||||||| ||||| | ||| || ||||| || ||||||||||| | ||| || ||| Sbjct 3983446 GTGCCAATCAGATCCT-GAGTCGTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGGTG 3983388 Query 141962 TTCGGTGTCGGTTCCTTCACCACCCAGTTCAACACTCGTGACTCTCTTGGT 142012 ||||| ||||| || | || ||||| |||||| |||||| | ||||| Sbjct 3983387 TTCGGCGTCGGGTCTTATACGTACCAGTACAACACGCGTGACACCTTTGGT 3983337 >seq83 Length=912621 Score = 122 bits (134), Expect = 8e-23 Identities = 256/374 (68%), Gaps = 27/374 (7%) Strand=Plus/Minus Query 119492 CCGCGCTTCGCCAGGTAGTACGCGAGGTTGGTCCAGCCAATCCCCAGTGTACGGCGCAGC 119551 ||| | ||||| | |||||| |||| |||| || || |||||||| ||||| || | Sbjct 580743 CCGTGTTTCGCTAAGTAGTAAGCGAAGTTGATCACTCCTATCCCCAGCGTACGACGGCCC 580684 Query 119552 TTGGT-CTTC--TCTGCCGCCAGAACCGGGTAGTTCTGATAGTCCAGCAGTCGGTCCAGA 119608 | | | | |||||||| | | |||||| | ||||| || ||||| ||| || Sbjct 580683 ATCGCGCCGCGTTCTGCCGCAATCAGCGGGTAATCTTGATAATCGAGCAGGGCGTCGAGC 580624 Query 119609 GCACGAACCAGTGTACGGACAGGCTCACGCATGTCTTCCAGCT--------TC-TCGATC 119659 ||||| || | | | || |||| || |||||||||| || | ||| Sbjct 580623 GCACGCACG-GCG-AGGGT--GGCTAAC-----TCTTCCAGCTCACTGAGGTCATTGATT 580573 Query 119660 TTGCCAAGGTTAATGGCAGACAGAGTACACAGGGCTACCTCGCCCGGGTCTTCTGGATCG 119719 ||| | ||| | ||| || || ||||| || || | ||| || ||| | ||| Sbjct 580572 GCGCCCAAGTTGAAGGCTGATAGCGTACAGAGAGCGATCTCACCA----CTTTCG--TCG 580519 Query 119720 TTAATGTCGTTGATCGGATGCGTCGGCAGCGCGATCTCCATACACAGGTTGGACTGCTTC 119779 ||||| ||||| | ||| | |||||||||||||| || | ||| ||||| ||||| Sbjct 580518 TTAATATCGTTTAACGGTTTAGTCGGCAGCGCGATTTCTAAACAAAGGTTTGACTGGCGT 580459 Query 119780 ACCGGGGCCTGTTTAGGGTCAAACGGGCTGTTGGTATTACAGTGGTCAACGTGCTGAACA 119839 || |||||| || ||||||||||| | ||||||||||||||||||| || | | Sbjct 580458 ACAGGGGCCACCGCCGGATCAAACGGGCTATGAGTATTACAGTGGTCAACGTTTTGGATA 580399 Query 119840 TAAATACGACCAGT 119853 |||||||| ||||| Sbjct 580398 TAAATACGGCCAGT 580385 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 117821 TTCAGCATATACTGAGTGCCGGACAAATGCAAGGCTTCATCACGGGCAATCAGTTCAATA 117880 || ||||||| ||| || || | || |||| |||||| || || || || || || Sbjct 582336 TTTAGCATATGCTGTGTTCCCGTCAGGTGCAGGGCTTCGTCCCGTGCGATAAGACGGATG 582277 Query 117881 ATGTTGGTGTTGCCCAGCATTACCCCGCGCTCGCCGAACGCAAATGAGCAGGCGAAGCTC 117940 || |||| || || ||| | | | |||||| ||||||| ||||| || || |||||| Sbjct 582276 ATCTTGGCATTACCTTCCATCAGCTCACGCTCGGCGAACGCGAATGAACAAGCAAAGCTC 582217 Query 117941 ACGTAGAAGCGGATCGCTTCCAGTGCGTTGATATTGTGCAGGCACAGGTACAGC 117994 |||||||| || || ||||| || || |||| | |||||| ||||| ||| Sbjct 582216 ACGTAGAAACGAATGGCTTCGAGGGCATTGACGCTCATCAGGCAGAGGTAAAGC 582163 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 118113 TCATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGT 118172 ||| ||| ||||| || || | | ||| || || ||| ||||| || ||||| |||| Sbjct 582011 TCACGATATCGTCGAATACTAGAGCCGGGTCGTTCACGATATTACGAATAATATGAGTGT 581952 Query 118173 ATGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAG 118227 | || || |||||||| || || ||||||||| || || |||||||||||||| Sbjct 581951 AAGAACGTGAGTGGATCGTTTCGGAGAACGCCCAGGTTTCAACCCATGTTTCCAG 581897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477508214148840