Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq122 257 5e-64 >seq122 Length=4874392 Score = 257 bits (284), Expect = 5e-64 Identities = 331/449 (74%), Gaps = 17/449 (4%) Strand=Plus/Minus Query 25866 CTGAGGCTGTTGAGGTTGGCCCCAACCGGTGTTACTTGCGCTACGA--TTACCGCCGCC- 25922 ||| ||||| ||||| |||||||||||| |||| |||| || || | ||||||||| Sbjct 4802448 CTGTGGCTGCTGAGGCTGGCCCCAACCGTTGTTG-TTGC-CTGCGCCCTGACCGCCGCCT 4802391 Query 25923 GCTG-----CCGCCTTCTGGAGCCTTGCCG---ATCATCTGCATGGTTCCGCCAACGTTG 25974 |||| ||||| | |||| ||| | |||||||||||| ||||||||||| Sbjct 4802390 GCTGGAGCACCGCCACCCTGAGCACGACCGCCCAGCATCTGCATGGTGCCGCCAACGTTA 4802331 Query 25975 ACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTC---CCACTTGCGGGTTTTC 26031 ||||||| ||| |||||||| ||||||||| ||| || ||| || ||||| | | Sbjct 4802330 ACCACAACTTCGGTGGTGTACTTCTCAACGCCAGCCTGGTCAGTCCATTTACGGGTCTGC 4802271 Query 26032 AGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCT 26091 ||| || || || |||||||| || ||||| |||||| || || || | || || Sbjct 4802270 AGTGCGCCTTCGATATAAACCTGAGAGCCTTTACGCAGGTATTCACCGGCCACTTCAGCC 4802211 Query 26092 ACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGC 26151 | |||||| |||||||| ||||| |||||||| || ||||| |||||||||||||| Sbjct 4802210 AGCTTGCCGAACAGCACAACGCGGTGCCATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGC 4802151 Query 26152 TTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGC 26211 || ||| |||| ||| ||||| || | || |||||||| || || |||||||| ||| Sbjct 4802150 TTGTCGCGCCAGGATTCGGAGGTAGCCAGAGTGATGTTGGCAACGGCACCGCCATTCGGC 4802091 Query 26212 ATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCCG 26271 ||||| || | || || || | |||||| || ||||| | |||||||| |||||||| Sbjct 4802090 ATGTAGCGAACTTCCGGGTCCTGCCCCAGATTTCCGACTAAAATTACTTTGTTTACGCCT 4802031 Query 26272 CGTGATGCCATTATTTATCTTTCCAGTTA 26300 | || || | | || ||| ||| |||| Sbjct 4802030 C-TGCTGGCCATGTTGCTCTCTCCGGTTA 4802003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159805713865658