Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq1959 89.7 1e-13 seq154 89.7 1e-13 >seq1959 Length=43063 Score = 89.7 bits (98), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 21393 GAACTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGAT 21452 || || |||| ||| | | || || || ||||||||| |||||||| |||| || | Sbjct 9607 GATCTTAAGCTGGCTAAGTCAACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCT 9666 Query 21453 GCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTT 21512 |||||||| || || ||||| ||||||||||||||||| ||||| || ||| |||| Sbjct 9667 GCACTCGACGCAAAGTACACAAAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTC 9726 Query 21513 CG 21514 || Sbjct 9727 CG 9728 >seq154 Length=560718 Score = 89.7 bits (98), Expect = 1e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 14873 TGAAAGCGATGGCGAAAGACCTGAAAACTCCAGTTATCTCATTAAGCCAGCTCTCCCGCG 14932 ||||||| |||||||||| ||||| ||||| || | ||| ||||| |||| Sbjct 275553 TGAAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTCGCCTTATCACAGCTTAACCGCT 275494 Query 14933 ATGTTGAGAAGCGGCCAAACAAGCGCCCGACAAACGCAGATTTGCGTGATTCAGGAAGCA 14992 | ||| |||| || | || || || ||| ||||||||||||| |||||| | Sbjct 275493 CATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCAGATTTGCGTGAGTCAGGATCGA 275434 Query 14993 TTGAACAGGACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGACGAGAACA 15052 |||| ||||| || |||| ||||| | ||||||| || | ||| ||| |||| |||| Sbjct 275433 TTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGTGACGAGGTGTATCACGAAAACA 275374 Query 15053 GT 15054 || Sbjct 275373 GT 275372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128278458820540