Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_018269.1 Length=31766 Score E Sequences producing significant alignments: (Bits) Value seq154 105 1e-18 >seq154 Length=560718 Score = 105 bits (116), Expect = 1e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25059 AAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGT 25118 ||| || ||||||||||| | ||| ||| || |||| |||||||||||||||| | | Sbjct 275551 AAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTCGCCTTATCACAGCTTAACC--GCT 275494 Query 25119 CTTGAAAACAGACAG--GATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGA 25176 | | | ||| | ||||| || ||| | |||||||| ||||| ||||| || ||| Sbjct 275493 CATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCAGATTTGCGTGAGTCAGGATCGA 275434 Query 25177 TAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACA 25236 | || |||||||| || | ||| || || || || ||||| |||||| || ||| Sbjct 275433 TTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGTGACGAGGTGTATCACGAAAACA 275374 Query 25237 GCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGG 25285 | | |||||||| || || ||||| || || || || | ||||| Sbjct 275373 GTGATCTTAAAGGCATCGCGGAAATTATTATCGGTAAGCAGCGTAATGG 275325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101522048926368