Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq3091 134 4e-27 seq2664 80.6 7e-11 >seq3091 Length=6183 Score = 134 bits (148), Expect = 4e-27 Identities = 254/369 (69%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 3283 GTTGGCCCGCGTATGGTTTCCGCCATTCATGCGCGTTTGCGCGTTAAGCAGGTGCAAAAA 3342 |||| |||| || | || ||| |||||||| |||| ||||| |||| || || || Sbjct 5983 GTTGCCCCGGGTGTAATTCCCGGGGTTCATGCGGGTTTCAGCGTTGAGCATGTCCAGAAG 5924 Query 3343 GTC-GTGAAAATCCTCAATTTCGCCAGCTTCC--AGCGCTTTATTGATGTGCTGCTCTGC 3399 ||| ||||| || | || || | | | | || ||| |||| | |||| ||||| Sbjct 5923 GTCCGTGAAG-TCATGGAT--CGTCTGGTCACTAAGGGCTGCGTTGAAGCGCTGTTCTGC 5867 Query 3400 CAGTTGGTTGAGTTTAACCCATGTAAAGCCCTTCATGGTGCGCACCGTAAAGCCCCAGGC 3459 | | |||| || ||||| || || ||| ||| || ||||||||| || Sbjct 5866 CCGGCCATTGAACTTCACCCAGGTGAAAAGGAACATCTGGCGAACGTCAAAGCCCCACGC 5807 Query 3460 TTCGGCCAGATCCATAGCTTCACGGTTGTGGGTGCCGGTGTACCACATCGCCAGAACGGC 3519 || ||||| || ||||| ||| || || || |||||||||||| ||| ||| || Sbjct 5806 CTCCGCCAGCTCACGGGCTTCCTGGTCATGCGTACCCGTGTACCACATCACCAAAACAGC 5747 Query 3520 GTTTTCTGCGGCCAGCTCCCACACAGGGAGGCGTTTCATATCGATCAAGCTCATGGTGTC 3579 ||| || || | |||||||||||| ||||| | ||||| |||| | | | |||||||||| Sbjct 5746 GTTATCGGCTGACAGCTCCCACACGGGGAGCCTTTTCAGATCGGTGATGGTCATGGTGTC 5687 Query 3580 GTAATGGCTGGCTGCCGCGCCGTTGCTTACTGTGTTGCCGTAGCTCCACGCGGGATCTGC 3639 ||| || | | ||||| ||| ||| | ||||| ||||| ||| | ||||| || Sbjct 5686 GTAGTGATTACCAGCCGCACCGCGGCTGATAGTGTTTCCGTACTGCCATGGCGGATCAGC 5627 Query 3640 ATAGATAAG 3648 || || || Sbjct 5626 GTATATCAG 5618 >seq2664 Length=6989 Score = 80.6 bits (88), Expect = 7e-11 Identities = 88/116 (76%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 18864 TGGAAGCCTACCGCAAGGAGTGGGATGCCAAGCGCGGCTGCTGGAAAGACAACCCTTTGC 18923 |||||| |||||| || |||||||||| |||||| |||||||||||||| || || | | Sbjct 6275 TGGAAGGCTACCGTAAAGAGTGGGATGACAAGCGAGGCTGCTGGAAAGATAAGCCATACC 6334 Query 18924 ACGACTACACCTCGCACGCTTCGGACGGTTTCCGCTACTTCGCTGTAGCGATGAGC 18979 | ||| | || || |||| | |||| || || || ||||| || ||| |||| Sbjct 6335 ATGACCAAACATCACACGGCGCTGACGCCTTTCGATATTTCGCAGTGACGA-GAGC 6389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127785695471616