Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq43 118 8e-22 seq32 102 6e-17 >seq43 Length=2082672 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| || || | ||| | || || || || || |||||||| || | | || | Sbjct 901291 AAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGA 901232 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| || | ||||| || ||||| ||||||||||| ||||| || || ||||||||| Sbjct 901231 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGGATGCCTTCT 901172 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || ||||| ||||| ||||| | || | || ||||| | ||| ||||| ||||| Sbjct 901171 TTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACTTCCAGAGTA 901112 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| || | || || ||||| |||||||| Sbjct 901111 ATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 901074 >seq32 Length=2339535 Score = 102 bits (112), Expect = 6e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820 ||||||| ||||||| || ||||| | |||||| | || || | || || || | Sbjct 1159309 CATAACCACTGGGATCTCGACCATCAAGACTGTACCTATCATTAAGGTAAATAGCATCTG 1159368 Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880 |||| | | ||| ||| || ||||||||| |||||||| ||||| || ||||||| Sbjct 1159369 CTAAACCTTGTTCAGGAGAAGCAGTCCATTCTAAAATTTTTTTGGCCCAGTACATTCTCA 1159428 Query 13881 TATATCCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGT 13940 | | || ||||||||||| | | | | |||| |||| |||| ||||||||| | Sbjct 1159429 AAAACCCATGCATTTTGCCCTCCTTCACCAACTGTATCTGTGCAGAGTTCCACAAGTCAT 1159488 Query 13941 CATGAGTTTCGGAATTTTCTAATTCT 13966 ||||||| | |||| | || |||| Sbjct 1159489 CATGAGTCTTTGAATCTCGTAGTTCT 1159514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396248151945891