Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_018837.1 Length=122024 Score E Sequences producing significant alignments: (Bits) Value seq122 96.9 3e-15 seq109 86.0 5e-12 >seq122 Length=4874392 Score = 96.9 bits (106), Expect = 3e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 39775 TTGGTACGCCCTACAGGATTCGAACCTGTAACCTACGAATTAGAACTACGTTGCTCTGTC 39834 ||||||||||||||||||||||||||||| ||||||| |||||| || |||||| || Sbjct 814417 TTGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATC 814358 Query 39835 CAATTGAGCTAAGAGCGC 39852 ||| ||||||||| |||| Sbjct 814357 CAACTGAGCTAAGGGCGC 814340 >seq109 Length=705085 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 39776 TGGTACGCCCTACAGGATTCGAACCTGTAACCTACGAATTAGAACTACGTTGCTCTGTCC 39835 |||||||||||| ||||||||||||| | ||||||| |||||| || |||||| ||| Sbjct 321822 TGGTACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 321763 Query 39836 AATTGAGCTAAGAGCGC 39852 || ||||||||| |||| Sbjct 321762 AACTGAGCTAAGGGCGC 321746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390322204309855