Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq122 176 5e-39 seq83 167 3e-36 >seq122 Length=4874392 Score = 176 bits (194), Expect = 5e-39 Identities = 147/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || ||||| || |||||||| ||||| ||| | |||||||| |||||||| || || ||| Sbjct 3215816 GGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAG 3215757 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 || ||||| |||||||||||||||||||| || || ||||||||||| || || |||||| Sbjct 3215756 CACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTTAAC 3215697 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAGTCTATAA 43901 ||| |||| || ||||||||||| ||||| || | || || ||||| || || || ||| Sbjct 3215696 TCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGCCTTTAA 3215637 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || ||||| ||||| ||||| ||||| || ||||||| ||| || || | | Sbjct 1181487 GGGGGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCGATGGAA 1181428 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 | |||||||||||||||||| | ||||| || || || || ||||| || || || ||| Sbjct 1181427 GACCCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGTTTCAAC 1181368 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAG 43894 || |||||| |||||||||| || || ||| | || || || || |||| Sbjct 1181367 TCGCTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAG 1181315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 282/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Plus Query 131909 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 131967 ||||| || ||||| | || || | | ||| |||| |||| || ||||||||| | || Sbjct 2805841 CGTTTCTACGATGCGATCTCCAC-CTTTAAGATTTCGCTGCCGACGCCAATTATGTCCGG 2805899 Query 131968 TGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 132027 | || || || || ||||||||| || ||| | ||||| ||| || | Sbjct 2805900 CGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTGATTGAGTGCGGCGACAGCCT 2805959 Query 132028 AAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACGAGCTGGTA 132086 | || |||||| || || ||| | ||| | | || ||||| | || || |||| Sbjct 2805960 TGATTCCATTAACGCCACCTCCAGCG-CGATTGTGAAGTACGTTTCTCAGCGTGCCGGTA 2806018 Query 132087 TAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAG--T 132144 | || || |||| ||| | ||||| || |||| | ||||||| | Sbjct 2806019 TCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCAT 2806078 Query 132145 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 132204 || ||| ||| || ||||| |||| || || ||||| || || || || || || || Sbjct 2806079 TCCACAC-CGGCTGC-ATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAGTCCTGCTC 2806136 Query 132205 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 132264 ||| || || | || || ||||| || || || || || |||||||| | ||||| Sbjct 2806137 TCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCATCTGGAAGT 2806196 Query 132265 AGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATAT 132324 || | ||| | || ||||| || ||| ||||| || | ||||| | || ||||| Sbjct 2806197 GGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTGCGTCATAT 2806256 Query 132325 GGACTACGG 132333 ||||||||| Sbjct 2806257 GGACTACGG 2806265 >seq83 Length=912621 Score = 167 bits (184), Expect = 3e-36 Identities = 318/467 (68%), Gaps = 1/467 (0%) Strand=Plus/Plus Query 131908 TCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGG 131967 ||| |||||||||||||| || || | || |||| || ||||| ||||| ||||| || Sbjct 579742 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 579801 Query 131968 TGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 132027 | || || || |||||||| ||| || || |||| || || ||| || Sbjct 579802 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTT 579861 Query 132028 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 132087 | | ||||| ||| ||||| | || || |||| |||| |||| || || || Sbjct 579862 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 579921 Query 132088 AGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTTCG 132147 |||||||| | ||| ||||||| ||| ||| || ||||||| | Sbjct 579922 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 579981 Query 132148 ACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCA 132207 ||||| ||| ||| || |||| ||||| ||||| || || || |||||||| || || Sbjct 579982 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 580041 Query 132208 AGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGA 132267 ||| || | || || ||||| || ||| || ||| || ||||||||||| ||| | || Sbjct 580042 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 580101 Query 132268 GAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGA 132327 | | ||||||| |||||||||||| || || || | |||||| | || || | || Sbjct 580102 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 580161 Query 132328 CTACGGAATTCAAATTAATGACCTTATGATGGAACGCCTTGGTAAAA 132374 ||||| | ||||| || | || ||| |||| | |||||||| Sbjct 580162 TTACGGCGTACAAATCAACAAACTCATGTATCAACGTC-TGGTAAAA 580207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541135232558640