Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq17 100 2e-16 seq3962 91.5 1e-13 >seq17 Length=3381533 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 || || || ||| |||||| |||| |||||||||||||||||| || ||||| ||| Sbjct 3156374 GGGTAGAATATTCTTTCACATATTAGTTGAGCAATCCTGTCCCCTTTGTTCACTTTAAAT 3156433 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 | || |||| ||| ||||||| ||| ||||| || || || | ||||| ||||| || Sbjct 3156434 ACAGTTTCGGCATGGTTGAACATCACTACTCCAACATTCCCACGATAATCTTCATCTATA 3156493 Query 9187 ACACCAGC 9194 |||||||| Sbjct 3156494 ACACCAGC 3156501 >seq3962 Length=6517 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| ||||| || || ||||| || |||| | || || | |||||| || ||||| | Sbjct 6288 CTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 6229 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 |||| ||||| || || | ||||| |||||||||||| || || || ||| Sbjct 6228 TCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCT 6169 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || || || | ||| ||||| | || || || || || || | ||| || |||| Sbjct 6168 CAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGACAA 6109 Query 48757 AAATCTGCAT 48766 |||||||||| Sbjct 6108 AAATCTGCAT 6099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380908522913949