Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq122 293 3e-74 seq83 217 2e-51 >seq122 Length=4874392 Score = 293 bits (324), Expect = 3e-74 Identities = 448/633 (71%), Gaps = 18/633 (3%) Strand=Plus/Plus Query 40720 CCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTA 40779 || ||||| |||||| | || ||||| || || ||||| |||||| | || || | Sbjct 2805880 CCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTG 2805939 Query 40780 ATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCC---GCGATCGTGAAG 40836 || || | || || || | ||| | ||||| || ||| ||||| |||||| Sbjct 2805940 ATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCC---ACCTCCAGCGCGATTGTGAAG 2805996 Query 40837 TATATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCA 40896 || | ||||| ||||| ||||| || | |||||||| | ||| || || |||| Sbjct 2805997 TACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGC 2806056 Query 40897 AAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAAACACATTCAG 40956 ||||| || ||||||||| | || || ||| || ||||||| || ||| | ||| Sbjct 2806057 CCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCACTTCCAG 2806116 Query 40957 ACGGCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAACCCTGTATTAT 41016 || ||||| || ||||| || |||||||| || || || |||||||| ||||||| || Sbjct 2806117 ACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTAC 2806176 Query 41017 CCGATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCGTGGCGTTGAA 41076 || || |||||||| ||||| |||| |||| |||| ||||| || ||||| ||||||||| Sbjct 2806177 CCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAA 2806236 Query 41077 GAAAACCGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAGCGT 41136 | ||||| | ||||| |||| || ||||| ||||| ||| | |||||||| |||| Sbjct 2806237 GGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCTGATGTATCAGCGC 2806296 Query 41137 TTAATCAATAACGATTACATCACTCTGTTCAGCC---CTGACGTTGCGAACGATCGCCTG 41193 | | || || | || ||||||||||||| | |||| ||| | || || Sbjct 2806297 CTGCTGAAGGGTGAAGAGATTACTCTGTTCAGCCCGTCCGACG-TGC-----CTGGCTTG 2806350 Query 41194 TATGACGCGTTCTATCAAGCGGATCAGACTGAGTTTGAAGAACTGTATACCAGTCTTGAA 41253 ||||||||||||| || || |||||| ||||||||| ||||| |||| || Sbjct 2806351 TATGACGCGTTCT-TC--GCCGATCAGGATGAGTTTGAGCGCCTGTACACCAAATACGAG 2806407 Query 41254 AAAGACCCAACGGTACGCAAGAAACGCATCAAAGCGGTAGATCTGTTCCAGTTGCTTGTT 41313 |||||| | | |||||| | ||| | || ||||||||||||||| | || | | Sbjct 2806408 AAAGACGACAGCATCCGCAAGCAGCGCGTGAAGGCGGTAGATCTGTTCTCGCTGATGATG 2806467 Query 41314 CAGGAACGCGCACAGACCGGACGCAACTACATT 41346 ||||||||||| ||||| || | ||||||| Sbjct 2806468 CAGGAACGCGCCTCTACCGGCCGTATCTACATT 2806500 Score = 131 bits (144), Expect = 2e-25 Identities = 198/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 39601 TCGAACAACTGAAAACCACACCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTG 39660 ||||||| ||||||| | || ||| ||| | ||||||||||| ||||||||| | Sbjct 3442496 TCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGCATCATCGTTTCTGCATGGAACGTCG 3442437 Query 39661 TTGATCTGGATGATATGGCTCTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCA 39720 || |||||||| ||||| ||| ||||| ||| |||||||||||| ||| Sbjct 3442436 GCGAACTGGATGAGATGGCGCTGGCCCCGTGCCACGCGTTCTTCCAGTTCTACGTTGCGG 3442377 Query 39721 ACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTGATGTCTTCTTAGGGTTGCCGT 39780 |||| || || || || ||||||||| || ||| ||||| | || |||||| Sbjct 3442376 ACGGCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGT 3442317 Query 39781 TCAATATCGCCTCCTACGCTCTCCTGACGCATATTATCGCTGATATTTGCGGGTATGAAG 39840 ||||||||||| ||||||| | ||| |||||| || || | |||| |||| Sbjct 3442316 TCAATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAG 3442257 Query 39841 TGGGCGATCTGGTTTGGACTGGCGGTGATGTCCATATCTACA 39882 |||| ||| | || ||||| || || ||| |||| | |||| Sbjct 3442256 TGGGTGATTTTGTCTGGACCGGTGGCGATACCCATCTGTACA 3442215 Score = 122 bits (134), Expect = 1e-22 Identities = 349/519 (67%), Gaps = 26/519 (5%) Strand=Plus/Plus Query 43507 GTCAACGCTCTGGAAGCGATCCGCTTCTACGTGTCGTTTACCTTCACGTTCAACTTTGCC 43566 |||||||| ||||||||||||||||| ||||| || ||| | | ||| ||||||| Sbjct 2808236 GTCAACGCGCTGGAAGCGATCCGCTTTTACGTCAGCTTCGCCTGCTCTTTCGCCTTTGCC 2808295 Query 43567 GAACAAGGCAAGATGGAAGGTAACGCGAAGATCATGCGTCTGATTGCCCGTGATGAAGCA 43626 || | | ||||||||| || || || ||||| ||||| ||||| |||||||| Sbjct 2808296 GAGCGCGAACTGATGGAAGGCAATGCCAAAATCATTAAGCTGATCGCCCGCGATGAAGCT 2808355 Query 43627 CTTCATCAGAAAGGCACTCAAAGCAAGATCCGACTCTG----GCAGATGGGTAAAGATGA 43682 || || | || ||||||| |||| | || ||| |||| |||| |||| || Sbjct 2808356 CTGCACCTGACCGGCACTC--AGCATATGCTGAACCTGCTGCGCAG-TGGG-GAAGACGA 2808411 Query 43683 CCCAGAAATGGCGGAAATCGCTTACCAGTACGAAGAAGA-AGCGACAAAGATTTTCCTGG 43741 || |||||||| || || ||| | ||| | |||| || || | | ||| || Sbjct 2808412 TCCGGAAATGGCCGAGATTGCTAAAGAGTGCCGTCAAGAGTGCTAC-GATCTGTTCGTGC 2808470 Query 43742 AAGTGTACGAACAGGAAAAAGAATGGGCTGAACACCTGTTCTCTATCGGTGATGTAGACG 43801 | ||| ||||| ||||| ||||| ||| | |||||| | ||| | | | | | Sbjct 2808471 TGGCTGCCGAGCAGGAGAAAGAGTGGGCGGAATATCTGTTC---AGCGGCGGT-TCAATG 2808526 Query 43802 GCGTATCCCTGA--AAAG---TACGATCGC-CTATATTGAACACCTGACGGATCAGCGTA 43855 | ||||| |||| | | | || || ||||| || | || | |||| Sbjct 2808527 --ATTGGCCTGAATAAAGATATTCTGTGGCAGTACATTGAGTACATCACCAACATCCGTA 2808584 Query 43856 TGCGCGCGGTTGGCTTGCAGTCT-CCATTTAAACCAACGC-CGAACCCGTATCCGTGGAT 43913 || ||| ||||| || | ||| || |||||| | ||| |||||||| |||||||| Sbjct 2808585 TGAACGCTGTTGGTCTGGA-TCTGCCGTTTAAAAC-CCGCTCGAACCCGATCCCGTGGAT 2808642 Query 43914 GAACAAATGGTTGAAGTCTGACAACGTACAGGTAGCCCCGCAAGAGGTTGAAGTAAGTTC 43973 ||| ||| || ||| || ||||| ||||| || ||||| || || ||||| || || Sbjct 2808643 CAACTCGTGGCTGGTGTCCGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGCTC 2808702 Query 43974 TTACCTGGTTGGCAACCTCAACACTGAGATCAGCGACGA 44012 ||||||||| || | || || |||| ||| || ||| Sbjct 2808703 TTACCTGGTCGGACAGATCGACTCTGAAGTCAACGCCGA 2808741 Score = 109 bits (120), Expect = 6e-19 Identities = 169/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 42979 TTTGAAAATCTTACAGAAAAACAGTTATCCTTCTTTTGGCGTCCAGAAGAAATTGACTTA 43038 |||||||| || | ||||| ||| | || ||||| ||||| || |||||| | ||| | Sbjct 2807744 TTTGAAAAGCTGATCGAAAAGCAGCTCTCTTTCTTCTGGCGCCCGGAAGAAGTGGACGTC 2807803 Query 43039 TCGATCGACCGTATGCAGTACGCGAAAATGCCGGAACACGAAAAAATCATTTTCGATTCA 43098 ||| ||| ||||| | || | |||| || ||||||||| ||| || ||| Sbjct 2807804 TCGCGCGATCGTATTGACTATCAGGCGCTGCCAGAGCACGAAAAACACATCTTTA--TCA 2807861 Query 43099 --AACCTACAATATCAAACCCTGTTGGATACCATTCAGGGACGCGGCCCTAACCTGGCTT 43156 ||||| | ||||| || ||| |||| | |||||||||||| |||| ||| |||| | Sbjct 2807862 GCAACCTGAAGTATCAGACTCTGCTGGACTCTATTCAGGGACGCAGCCCGAACGTGGCGT 2807921 Query 43157 TCCTCCCTATCGCTTCCGATGTCTCAA-TGGAAACGTGGATCGAAACATGGGCGTTC 43212 | || || | | | |||| | || ||||||| ||||| ||||| ||||||||| Sbjct 2807922 TGCTGCCGCT-GATCTCGATCCCGGAACTGGAAACCTGGATTGAAACCTGGGCGTTC 2807977 Score = 105 bits (116), Expect = 8e-18 Identities = 244/363 (67%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 153310 CAACGAGAACGCGAACAAAGAC-GCAAGGGTATTCCCTACACAGCGCGATCTGCTGGCTG 153368 ||| || || || || || || |||||| || ||| || ||||||||||||||||| | Sbjct 3819927 CAATGAAAATGCCAATAAGGATAGCAAGGTGATCCCC-ACTCAGCGCGATCTGCTGGCCG 3819985 Query 153369 GTATCGTAGCGAAACACTTCGCACGTAACCACATTCTGCCAAAACACATTGTAGAAGCGC 153428 | ||||| || ||||||| ||| ||| | || || ||||| | | || || | Sbjct 3819986 GGATCGTCGCCAAACACTACGCCCGTCAGCATATGCTGCCGCGTGATGTGGTCAGCGCCC 3820045 Query 153429 ATGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCCATACACAA 153488 |||| || || ||||| ||||| ||||| || ||| ||||| || | Sbjct 3820046 ATGAGCGCGGCGAGATCCACTATCACGATCTCGACTACTCGCCGTTTTTCCCGATGTTTA 3820105 Query 153489 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 153548 ||||| ||| | || || || |||||| | | |||||||| ||||||||||| | Sbjct 3820106 ACTGCATGCTGATCGACCTGCGGGGCATGCTGACGCACGGCTTCAAAATGGGTAACGCCG 3820165 Query 153549 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 153608 | |||||||| || || || ||| || || || | | || ||||||| ||| | Sbjct 3820166 AGATCGAACCGCCTAAGTCGATCTCCACCGCCACCGCCGTCACCGCGCAGATCATCGCCC 3820225 Query 153609 AGATTGCCTCTCACCAGTACGGCGGGACAACCTTTGCTAACG--TTGATAAAGTGCTGGC 153666 || | ||| || ||||| || || ||| || | || ||||| |||||||||| Sbjct 3820226 AGGTCGCCAGCCATATTTACGGGGGCACCACCATT--AACCGTATTGATGAAGTGCTGGC 3820283 Query 153667 TCC 153669 || Sbjct 3820284 GCC 3820286 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 49477 TCCGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTC 49536 || ||||| ||||| | ||||||||||| | ||||||||||||| ||| |||||||| Sbjct 217251 TCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTC 217192 Query 49537 AAGTCCAGCAGGGGCCACCAAAT 49559 ||||||||| |||||||||| || Sbjct 217191 AAGTCCAGCTGGGGCCACCAGAT 217169 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 154683 TCACGGATAAAGGCTGGTACACAAACAGTTTCCACCTTGACGTTGATCGCAAGGTGACAC 154742 |||| || ||||| | ||||| ||||| |||||||| |||||||| ||||| | | Sbjct 3821285 TCACCGACAAAGGTTACTACACCAACAGCTTCCACCTCGACGTTGAGAAAAAGGTTAATC 3821344 Query 154743 CGTTCGAGAAAATCGACTATGAAGCCGATTATCATTACATCGCTACTGCTGGTCATATCA 154802 ||| ||| |||||||||| |||||| | |||| ||||| | | ||| |||| Sbjct 3821345 CGTACGACAAAATCGACTTTGAAGCGGGCTATCCGCCGATCGCCAACGGCGGTTTTATCT 3821404 Query 154803 GTTATGTTGAATTCCCTGATATGAAAAACAACCTGCAAGCCCTGGAAAAAGTCTGGGATT 154862 | || | || | ||| |||| | | |||||| | || ||||| | |||||||||| Sbjct 3821405 GCTACGGCGAGTACCCGAATATCCAGCATAACCTGAAGGCACTGGAGGACGTCTGGGATT 3821464 Query 154863 A 154863 | Sbjct 3821465 A 3821465 >seq83 Length=912621 Score = 217 bits (240), Expect = 2e-51 Identities = 306/430 (71%), Gaps = 0/430 (0%) Strand=Plus/Plus Query 40707 TAAACTGTCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTC 40766 |||| | || ||||||||||| || ||||| || || || || || || || || ||| Sbjct 579769 TAAAATTTCCTTACCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAG 579828 Query 40767 CAGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCCGC 40826 | || || | ||||| | || ||| | | ||| | ||||| | | || Sbjct 579829 CTCATGCGTGCTTATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCCACTTCTAGTGC 579888 Query 40827 GATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCGCGC 40886 ||||| || || | || ||||| || || || ||| |||| || || | ||||| || Sbjct 579889 TATCGTTAAATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGC 579948 Query 40887 TATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAA 40946 | || |||||||||||||||||| | ||||| || ||||||||||| || Sbjct 579949 GCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAA 580008 Query 40947 ACACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAAC 41006 |||| | |||||||| || ||||| || || || ||||| || || || ||||| || || Sbjct 580009 ACACTTCCAGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGAC 580068 Query 41007 CCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCG 41066 |||| ||| || || ||||| | ||| |||||| | | || || |||||||||||||| Sbjct 580069 ACTGTTTTACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCG 580128 Query 41067 TGGCGTTGAAGAAAACCGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGAT 41126 ||| ||||||| |||||| | |||||||| ||||| |||||||| | ||| | | || Sbjct 580129 TGGTGTTGAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCAT 580188 Query 41127 GTATAAGCGT 41136 |||| | ||| Sbjct 580189 GTATCAACGT 580198 Score = 120 bits (132), Expect = 3e-22 Identities = 292/432 (68%), Gaps = 14/432 (3%) Strand=Plus/Plus Query 41878 GACTGGGAATGGTTACGCGGTGAAATTAAAAAACACGGTTTGCGTAACTCAACGCTTTCT 41937 || |||||| | ||||| | ||||| || | ||| || || ||||||||||||||||| Sbjct 580952 GATTGGGAAAGCTTACGTGAAGAAATCAAGACACATGGCTTACGTAACTCAACGCTTTCA 581011 Query 41938 GCTTTAATGCCTTGTGAAAGTAGCTCACAGGTGAGTAACTCAACCAACGGGATTGAACCT 41997 || || ||||| | |||| || ||| | ||| | || ||||| || || ||| Sbjct 581012 GCATTGATGCCATCAGAAACCTCTTCGCAGATTTCTAATGCTACAAACGGTATCGAGCCT 581071 Query 41998 CCGCGCGGCCCTGTGAGTGTGAAATCTTCGAAAGAAGGTTCATTCAATCAGGTAGTACCA 42057 || |||||| ||| ||| | ||| | |||||||| ||| || |||||| || ||| Sbjct 581072 CCACGCGGCTATGTCAGTATCAAAGCCTCGAAAGACGGTATTTTACGTCAGGTCGTTCCA 581131 Query 42058 AACCAGAATAATCAGATTGACTTCTATGATTAT-CTCTGGACAATGGCAAA-ACGTGGAA 42115 || || | | | || || || | ||| ||| | |||| ||| | | | Sbjct 581132 ---GAGTATGAGC-GCTT-AC-AAGATCAGTATGAGCTG--CTATGGGAAATGCCTTCTA 581183 Query 42116 ACAAAGGTTATCTGTCTCATGTAGCGGTTATGCAGAAGTTTGTTGATCAGGCTATCTCTG 42175 || | ||||| | | ||| | | |||||||||||||||| || || ||||||||| Sbjct 581184 ACGATGGTTACTTACAACTTGTCGGGATTATGCAGAAGTTTGTCGACCAAGCTATCTCTT 581243 Query 42176 CAAACACAAACTATGATCCGGCCAACTTCCCAGATGGTAAAGT--GAAATCTGAAATCAT 42233 ||||||| ||||| |||||| | | | | | || ||||| | | | | | | Sbjct 581244 CAAACACCAACTACGATCCGACACGTTACACTGGCGGGAAAGTACCGATGCAGCAGT--T 581301 Query 42234 CCTTGAAGATCTGCTGTATGCAAACTATTTCGGCATCAAAACGCTGTACTACCACAACAC 42293 || |||| |||||| || | | |||||| | |||||||| ||||| || ||||| Sbjct 581302 ACTGAAAGACCTGCTGACCGCGTATAAATTCGGCGTGAAAACGCTTTACTATCAAAACAC 581361 Query 42294 CCGTGACGGTGC 42305 ||||| ||||| Sbjct 581362 GCGTGATGGTGC 581373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570044969110440