Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019400.1 Length=147940 Score E Sequences producing significant alignments: (Bits) Value seq122 105 6e-18 >seq122 Length=4874392 Score = 105 bits (116), Expect = 6e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 82546 AAAGGTGCAGTTGAATGCCTATGGGACATCTTTGGTGGGGAAGTTAACTCCAAAGGTTAC 82605 ||||| | || ||| || ||||| ||||| || || || || ||| || ||| Sbjct 3983561 AAAGGGTCGGTCGAAGTGCTGTGGGAGATCTTCGGCGGCACGGTCAATGCCAGGGGCTAC 3983502 Query 82606 AAGGTTCTTGATACTCACGTAGGCCTGATCTACGGTGACTCGATTACCGTTGCTCGTGCA 82665 ||||| || || | ||||| || ||||||||||| |||||||||||| | | ||||| Sbjct 3983501 AAGGTGCTGGACCCGCACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGCGTGCC 3983442 Query 82666 AAAGATATCTTTGAACGTCTGAAAGATAAAGGTTTTGCATCCAGCAATATCGTGTTTGGT 82725 || | ||| | |||||| | | ||||| ||||| ||||||| | ||||| || Sbjct 3983441 AATCAGATCCTGAGTCGTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGGTGTTCGGC 3983382 Query 82726 GTTGGTTCTTATACCACTCAGTACACAACCCGCGATTCACTGGGTATGGCTGTTAAAGCG 82785 || || |||||||| ||||||| || || || | | ||| | || | |||||| Sbjct 3983381 GTCGGGTCTTATACGTACCAGTACAACACGCGTGACACCTTTGGTTTCGCCATGAAAGCG 3983322 Query 82786 ACG 82788 ||| Sbjct 3983321 ACG 3983319 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 50030 GTCTTGAGCCATAGCGTTGATCGTCAGGTCACGACGAGACAGATCCTCCACCAGTGTCAC 50089 ||| || || || |||||||| ||||| || || || | |||||||| |||| || || Sbjct 3700809 GTCCTGGGCAATGGCGTTGATGGTCAGATCGCGTCGGGCCAGATCCTGTTCCAGCGTGAC 3700750 Query 50090 ATCGGG-GCTGAAGAATGTCTCGAAGTCAGTATGACCGTTACCAGTCTTACGCTCAGTAC 50148 ||||| || | | | ||||| | |||| |||| | || | ||||||||| || | Sbjct 3700749 GTCGGGCGCGGCATAGCAGA-CGAAGCCGGTATAACCGCTGCCGGACTTACGCTCGGTGC 3700691 Query 50149 GGGCGAGAGCATACTCTTCGTTGGTTTCAGGATGCAGGTATACTGGAAAAGCAGCGCCAA 50208 | || || ||||||||||||| | | ||| ||||| |||| || ||| | ||||| Sbjct 3700690 GCGCCAGCGCATACTCTTCGTGGCTGGAAGGGTGCAGAAATACCGGGAAATCGCGGCCAA 3700631 Query 50209 CCTG 50212 |||| Sbjct 3700630 CCTG 3700627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473242948092000