Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq83 145 2e-29 seq3434 84.2 5e-11 >seq83 Length=912621 Score = 145 bits (160), Expect = 2e-29 Identities = 421/638 (66%), Gaps = 10/638 (2%) Strand=Plus/Plus Query 224383 CCAACTCCAATTATGGCTGGACTACGTACTAACACTCGCCAATTTAGTTCTTGCGTAGTT 224442 || || ||||| |||||||| |||| || ||||||||||| || || ||||| || Sbjct 579782 CCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTT 579841 Query 224443 ATGAACGTTGGTGATAGTCTAGACAGCATTAGTGCTGGTAACAGTGCTATAATGCAGTAT 224502 || | ||| ||||| ||||| || | || | |||||||| | | || Sbjct 579842 ATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATAC 579901 Query 224503 ATTTCTAAGAAAGCCGGTTTGGGAGTCAACTATGGTCGTGTCCGTGCAGTTGGTTCAGA- 224561 |||| | || || | || |||| ||| ||| | ||||| | || ||| Sbjct 579902 GTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTAGG--CAGCC 579959 Query 224562 -AATTCGTGGTGGTGATGCTGTTCATACTGGATTGATTCCATTCCTACACGCAGTTGC-T 224619 ||| ||||||||||| ||| | ||||| || ||| ||| | ||||| || || | Sbjct 579960 CAATCCGTGGTGGTGAAGCTTTCCATACCGG-TTGTATCCCGTTCTACAAACACTTCCAG 580018 Query 224620 AAAACTGTTAAATCTTGTTCTCAAGGTGGTGTGCGTGGTGGTGCAGCAACAGTCCACTTC 224679 | | || |||||||| || ||||| || || || || ||||| || ||| | | | Sbjct 580019 ACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTAC 580078 Query 224680 CCATTGTGGCATTACGAGTTTGAAGATCTT-GTAGTACTAAAGAATAACAAAGGTACAGA 224738 || ||||||| | || ||||| | ||| |||| || || |||||| ||| || Sbjct 580079 CCTATGTGGCACTTGGAAATTGAA-AGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGA 580137 Query 224739 A-GTATCTCGTGTTCGTCAGTTGGATTATTGTTTCCAAATTAATAAAACTTTCTATCAAC 224797 | ||| | ||||| ||||| | ||||| | | ||||| || ||| | ||||||| Sbjct 580138 AGGTAAC-CGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTATCAAC 580196 Query 224798 GCTTGATTGAACGTAAAGATATTACTTTCTTCTCTCCAAGTGATGTTCCTGGTTTGTATG 224857 | || | || | ||||| | | ||| |||| ||||| || || | || | Sbjct 580197 GTCTGGTAAAAGGCGGCGATATCTCGCTATTCAGTCCATCGGATGTGCCAGGGCTATACG 580256 Query 224858 ATGCATTCTGTGCAGACCAAGAAAAATTTGAAAAGCTATACACTAAGTATGAAGCTGATC 224917 |||| |||| || ||||||| | | |||||| || |||||| |||| ||||| ||| Sbjct 580257 ATGCCTTCTTCGCTGACCAAGCAGAGTTTGAACGTCTTTACACTCAGTACGAAGCGGATG 580316 Query 224918 CAAATATTCGTAAGAAAACTATGCCAGCACTAGAAGTGTTCTCTCAACTAATGAATGAAC 224977 |||||||||| ||| || ||| | || |||| | | | | ||| | |||| Sbjct 580317 ATTCTATTCGTAAGCAAAAAATTAAAGCCGTTGATCTGTTTGCCCTAATGATGCAAGAAC 580376 Query 224978 GTTCTGAAACTGGACGTATCTATATCCAGAATATTGAC 225015 || || ||||| ||||| |||||||| || ||||| Sbjct 580377 GTGCTTCGACTGGCCGTATTTATATCCAAAACGTTGAC 580414 >seq3434 Length=6334 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 284184 ATGGGGATGTGGTGAAATTGGCAGACACGCCAGATTTAGGTTCTGGTTCTTC--GGAGTG 284241 ||| ||| |||| |||||||| |||| | ||||||||||||||||| | | || ||| Sbjct 5574 ATGCGGAAGTGGCGAAATTGGTAGACGCACCAGATTTAGGTTCTGGCGCCGCAAGGTGTG 5633 Query 284242 CGAGTTCGAGTCTCGCCATCCCCACCAT 284269 ||||||| ||||||||| ||| |||||| Sbjct 5634 CGAGTTCAAGTCTCGCCTTCCGCACCAT 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147498311966974