Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_019402.1 Length=76631 Score E Sequences producing significant alignments: (Bits) Value seq122 116 2e-21 >seq122 Length=4874392 Score = 116 bits (128), Expect = 2e-21 Identities = 191/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 69122 TTTGAAGATTTCACGACCAACACCATTAACTTCACCATAGGTTGCTTTCATGGCGAAACC 69181 ||||||||| ||||| || | || | ||||| ||||| || ||||||||||||||||| Sbjct 3983280 TTTGAAGATCTCACGCCCCTCTCCGTGCACTTCGCCATACGTCGCTTTCATGGCGAAACC 3983339 Query 69182 AAAGGTATCACGGGTTACATACTGGTAAGTGTATGAACCAATGCCGAGTACTACGTTTGA 69241 |||||| ||||| || |||||||| || || || || | ||||| || || ||| Sbjct 3983340 AAAGGTGTCACGCGTGTTGTACTGGTACGTATAAGACCCGACGCCGAACACCAC-ATTGC 3983398 Query 69242 AGATGCGAAATCC-TTCGCGGCGAGGCGAGCAAAGATTTCTTCGGCACGTTCCATAGTGA 69300 | || ||| || || || | || ||| | ||| | | |||||| || | || | Sbjct 3983399 TGCTGGCAAAGCCTTTGGCCTCCAGACGACTCAGGATCTGATTGGCACGCTCGAGGGTAA 3983458 Query 69301 TTGAATCACCATAAATCAGGCCAATCTTCGGATTAAGAACCTTGAAGCCTTTCTTATTGA 69360 | || || || || ||||| || | | ||| | || |||||| |||| | ||||| Sbjct 3983459 TCGAGTCGCCGTAGATCAGACCCACGTGCGGGTCCAGCACCTTGTAGCCCCTGGCATTGA 3983518 Query 69361 TGGTGCCACCGAAGGTACGCCACATCATTTCGA 69393 ||||| |||||| | ||||| || ||||| Sbjct 3983519 CCGTGCCGCCGAAGATCTCCCACAGCACTTCGA 3983551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 245075691867856